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The Place to Compare Genomes

Welcome to CoGe!   Organisms: 14,981     Genomes: 19,116     Nucleotides: 688,588,543,819     Genomic Features: 223,619,815     Annotations: 497,949,673


What is CoGe?

CoGe is a comparative genomics platform for all genomes across all domains of life in any state of assembly


Searching for organisms with "proteo" in their taxonomic description.
Open this search in OrganismView

CoGe allows you to easily find and analyze genomic data from any organism


Visualizing a prophage insertion in E. coli K12 MG1655 by differences in genome structure and GC3 content.
Visualize this genomic region in GenomeView

CoGe provides analysis tools for finding and comparing homologous sequences from any set of organisms


Using CoGeBlast to find and evaluate potential homologous hits.
Open CoGeBlast

CoGe allows you to find syntenic regions from between or within any organism


Syntenic dotplot between chromosome 1 of Arabidopsis thaliana and Arabidopsis lyrata and histogram of synonymous mutation values of syntenic gene pairs. Different colors and peaks show orthologous gene-pairs and those derived from a shared whole genome duplication event.
Generate a syntenic dotplot of these two Arabidopsis species

CoGe allows high-resolution sequence analysis for multiple genomic regions


Identifying fractionation and conserved non-coding sequences in maize and sorghum.
Run this analysis in GEvo
 
New to CoGe?

CoGe's Entrance Tools:
CoGe's unique system architecture provides many interconnected tools to create open-ended analysis networks. While there is no defined place to start an anlysis on CoGe, here are the common tools used to begin an analysis:

OrganismView: Search for organisms and perform analyses on their genomes

Search for organisms, get an overview of their genomic make-up, and visualize them using a dynamic, interactive genome browser. Example.

CoGeBlast: Blast sequences against any number of genomes of your choosing

Blast sequences against any number of organisms in CoGe.

FeatView: Searching for genomic features by name

Find and display information about a genomic feature (e.g. gene). Example.

SynMap: Whole genome syntenic dotplot anlayses

Compare any two genomes to identify regions of synteny. Example. (Powered by DAGChainer)

GEvo: High-resolution sequence analysis of genomic regions

Compare sequences and genomic regions to discover patterns of genome evolution. Example.

Latest Genomes

Number returned: Go
 



Date: 2012-05-19 22:37:22
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