SynFind Syntenic Depth Examples

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Syntenic Dopltot Syntenic Depth Calculation Known History
Screen shot 2012-03-27 at 5.39.50 PM.png Screen shot 2012-03-27 at 5.40.52 PM.png 1:1 syntenic depth
Screen shot 2012-03-27 at 5.32.45 PM.png Screen shot 2012-03-27 at 5.29.54 PM.png Obvious 1:1 orthologous regions.  Also has a "haze" of secondary synteny is due to the most recent vertebrate whole genome duplication even (1R).  There is an older whole genome duplication too (2R).
Screen shot 2012-03-27 at 2.53.56 PM.png Screen shot 2012-03-28 at 8.48.43 AM.png

Obvious 2:2 depth.

Share a recent whole genome duplication. Also share older whole genome duplictions (at least one)

Screen shot 2012-03-28 at 8.46.49 AM.png Screen shot 2012-03-28 at 8.47.57 AM.png 1:1 orthologous regions.  Secondary syntenic "haze" form 1R.
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