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Glossary

From CoGepedia

A list of terms used in various pages in this wiki that may need clarification.

Contents

  • 1 Genomic Evolution Terminology
  • 2 Methodology
  • 3 Algorithm Terms
  • 4 API Terms

Genomic Evolution Terminology

  • Biased fractionation
  • Chromosome Rearrangement
  • Conserved Non-Coding Sequence (CNS)
  • Contig
  • Deletion
  • Diploidization
  • DNA alignment
  • Dotplot
  • Fractionation
  • Genespace
  • Genomic Feature
  • High-scoring segment pair (HSP)
  • Homolog
  • Homeolog
  • Insertion
  • In-Paralog
  • Inversion
  • Local Gene Duplication
  • Neofunctionalization
  • Ortholog
  • Out-Paralog
  • Paleopolyploid
  • Paralog
  • Perfect Ortholog
  • Plant paleopolyploidy
  • Polyploid
  • Protein alignment
  • Repeat sequence
  • Subfunctionalization
  • Synonymous/Nonsynonymous Mutations (Ks/Kn)
  • Syntelog
  • Synteny
  • Tandem Gene Duplication
  • Transposition
  • Whole Genome Duplication

Methodology

  • Collinear Gene Order for detecting syntenic regions
  • Flanking Gene Method for detecting gene loss and transposition events
  • Useful divergence for comparing genomic regions
  • Data visualization: data abstraction for human perception

Algorithm Terms

  • E-value
  • Global alignment
  • Local alignment
  • Score
  • Scoring Matrix
  • Word size

API Terms

  • Chromosome
  • Dataset
  • Dataset group
  • Genomic feature
  • Organism description
Retrieved from "http://genomevolution.org/wiki/index.php/Glossary"
  • This page was last modified on 28 August 2010, at 18:49.
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