Log in
Glossary - CoGepedia
Page
Discussion
View source
History
Search
Navigation
Get Started
News
FAQs
Tutorials
Documentation
Glossary
References
System Support
Contact Us
Recent changes
CoGe links
CoGe Home
OrganismView
FeatViewer
CoGeBlast
SynMap
GEvo
Sites Linked to CoGe
PlantGDB
MaizeGDB
Sites Linked from CoGe
ViennaFold
TARGeT
Phylogeny.fr
Prosite
Toolbox
What links here
Related changes
Special pages
Printable version
Permanent link
Glossary
From CoGepedia
A list of terms used in various pages in this wiki that may need clarification.
Contents
1
Genomic Evolution Terminology
2
Methodology
3
Algorithm Terms
4
API Terms
Genomic Evolution Terminology
Biased fractionation
Chromosome Rearrangement
Conserved Non-Coding Sequence
(
CNS
)
Contig
Deletion
Diploidization
DNA alignment
Dotplot
Fractionation
Genespace
Genomic Feature
High-scoring segment pair
(
HSP
)
Homolog
Homeolog
Insertion
In-Paralog
Inversion
Local Gene Duplication
Neofunctionalization
Ortholog
Out-Paralog
Paleopolyploid
Paralog
Perfect Ortholog
Plant paleopolyploidy
Polyploid
Protein alignment
Repeat sequence
Subfunctionalization
Synonymous/Nonsynonymous Mutations (Ks/Kn)
Syntelog
Synteny
Tandem Gene Duplication
Transposition
Whole Genome Duplication
Methodology
Collinear Gene Order
for detecting syntenic regions
Flanking Gene Method
for detecting gene loss and transposition events
Useful divergence
for comparing genomic regions
Data visualization
: data abstraction for human perception
Algorithm Terms
E-value
Global alignment
Local alignment
Score
Scoring Matrix
Word size
API Terms
Chromosome
Dataset
Dataset group
Genomic feature
Organism description