View source for Web Services REST API

There are two main ways a programmer can interact with CoGe:
#Through the web pages via URLs
#Through CoGe's web services API (Application Programming Interface)

==1. Linking to CoGe==

Each web application of CoGe is designed for a particular task, and provides links to other web applications in CoGe.  This is how CoGe's [[Open-ended Analysis Network]] works.  To get information on how to link to a particular web application, please see that application's wiki.  If the information you are seeking is not immediately apparent, please feel free to e-mail [mailto:elyons@berkeley.edu Eric Lyons] and for help.

==2. CoGe Web Services API (RESTful)==

We are currently developing public web services for accessing and loading data in CoGe!

Here is our draft API specification document:<br>
http://docs.google.com/document/d/1GXOPIVvyTwoGR2IRjDNmdd2nj_6d8db7jx9hG8RxTDc


'''Organism Search'''
<pre>
curl http://genomevolution.org/coge/api/v1/organisms/search/col-0
{
   "organisms":
      [
         {
            "id": "1",
            "name": "Arabidopsis thaliana Col-0 (thale cress)",    
            "description": "Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Brassicales; Brassicaceae; Arabidopsis"
         }
      ]
}
</pre>

'''Organism Fetch'''
<pre>
curl http://genomevolution.org/coge/api/v1/organisms/1
{
   "id": 1,
   "name": "Arabidopsis thaliana Col-0 (thale cress)",
   "description": "Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Brassicales; Brassicaceae; Arabidopsis"
   “genomes” : [ 16911, ... ]
}
</pre>

'''Genome Fetch'''
<pre>
curl http://genomevolution.org/coge/api/v1/genomes/16911
{
   "id": 16911
   "name": "",
   "description": "",
   "version": "10.02",
   "link": "",
   "restricted": false,
   "sequence_type": {
      "name": "unmasked",
      "description": "unmasked sequence data"
   },
   "experiments": [31,32,33, ...],
   "metadata": [],
}
</pre>