View source for EPIC-CoGe Videos

===[[EPIC-CoGe]] used for visualization of quantitative genomic data (epigenomic and RNASeq)===
<youtube>WlVXwyo4mZM</youtube>

===[[EPIC-CoGe]] used for SNP visualization===
<youtube>JQ_xKH1sxy8</youtube>

==How to RNA-Seq in CoGe in three minutes==

This short video shows how to load, process, and visualize RNA-Seq data in CoGe:
*RNA-Seq Pipeline:  [[Expression Analysis Pipeline]]
*Quantitation of reads per position along a genome
*Quantitation of FPKM for genomes with structural gene annotations
*Individually mapped reads
*All visualized in the EPIC-CoGe Browser (Based on JBrowse)

<youtube>3fNyHGB02dM</youtube>

<youtube>JPZ8IrPnh_8</youtube>
<youtube>WlVXwyo4mZM</youtube>


==How to search for features in EPIC-CoGe==

This short video shows how to use the new Search button to find genomic features by name and navigate to them in the EPIC-CoGe Browser (Based on JBrowse)

<youtube>CPwMrZH1zuw</youtube>

==How to search quantitative tracks in EPIC-CoGe==

This short video shows how to search quantitative data tracks for max, min or a range of values in the EPIC-CoGe Browser (Based on JBrowse)

<youtube>Ret_uCv76k8</youtube>

==How to search SNP tracks in EPIC-CoGe==

This short video shows how to search SNP tracks for SNPs that overlap particular types of features or for particular types of SNPs in the EPIC-CoGe Browser (Based on JBrowse)

<youtube>oLhNYW2XGQM</youtube>

==How to download data in EPIC-CoGe==

This short video shows how to download track data, transformed track data, and search results in the EPIC-CoGe Browser (Based on JBrowse)

<youtube>QZllf-e-E_U</youtube>