View source for File:SynPlot-Chr1-At-v-Al.png

Syntenic dotplot and synonymous substitution histogram  of Chromosome 1 of Arabidopsis thaliana and Arabidopsis lyrata.  Syntenic gene pairs were identified by DAGChainer, and colored based on their synonymous substitution rate as calculated by CodeML.  Syntenic regions derived from speciation (orthologs) or from the shared whole genome duplication events (alpha and beta) are labeled.  These images were generated by SynMap and can be viewed at generated by SynMap at http://toxic.berkeley.edu/CoGe//diags/Arabidopsis_lyrata/Arabidopsis_thaliana_thale_cress/html/3068_8.CDS-CDS.blastn.dag_geneorder_D20_g10_A5.scaffold_1-1.w600.ks.html .