Difference between revisions of "TRNAView"

From CoGepedia
Jump to: navigation, search
 
(One intermediate revision by the same user not shown)
Line 4: Line 4:
 
[[Image:TRNAView-results.png|thumb|right|500px|Output from Aragorn.]]
 
[[Image:TRNAView-results.png|thumb|right|500px|Output from Aragorn.]]
  
tRNAView scans a DNA sequence for tRNAs using Aragorn <ref name="aragorn">.
+
tRNAView scans a DNA sequence for tRNAs using Aragorn <ref name="aragorn">.Dean Laslett and Bjorn Canback1.  ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC373265/ Nucleic Acids Res. 2004; 32(1): 11–16.]</ref>
  
 
You can search for a genome or enter a sequence.  Sequences can be submitted from [[SeqView]] in CoGe.
 
You can search for a genome or enter a sequence.  Sequences can be submitted from [[SeqView]] in CoGe.
  
tRNAView can be accessed [http://genomevolution.com/tRNAView.pl here].
+
tRNAView can be accessed [http://genomevolution.com/CoGe/tRNAView.pl here].
 +
 
  
  
Dean Laslett and Bjorn Canback1.  ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC373265/ Nucleic Acids Res. 2004; 32(1): 11–16.]</ref>
 
  
 
{{reflist}}
 
{{reflist}}

Latest revision as of 23:44, 21 February 2010

Selecting a genome to scan for tRNAs.


Output from Aragorn.

tRNAView scans a DNA sequence for tRNAs using Aragorn [1]

You can search for a genome or enter a sequence. Sequences can be submitted from SeqView in CoGe.

tRNAView can be accessed here.



  1. .Dean Laslett and Bjorn Canback1. ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences Nucleic Acids Res. 2004; 32(1): 11–16.