Tutorial for High School Students: Difference between revisions

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== Overview ==
== Overview ==


This tutorial is intended as a walkthrough for high school students to help them navigate and fully utilize the CoGe program.
This tutorial is intended as a walkthrough for high school students to help them navigate and fully utilize the CoGe program while learning about [http://en.wikipedia.org/wiki/Comparative_genomics comparative genomics].


== Lessons ==
== Lessons ==


{| width="925" cellspacing="1" cellpadding="1" border="1" style=""
'''Basics'''<br>
 
{| cellspacing="1" cellpadding="1" border="1" style="width: 1101px; height: 163px;"
|-
|-
! scope="col" | #  
! scope="col" | #  
! scope="col" | Name  
! scope="col" | Name  
! scope="col" | Description
! scope="col" | Description  
! scope="col" | &nbsp; New Program Used
|-
|-
| &nbsp; 1  
| &nbsp; 1&nbsp;
| [[Required Background Information]]  
| [[Required Background Information]]  
| Explains most of the basic genetic concepts and vocabulary required to use CoGe
| Explains the basic genetic concepts and vocabulary required to use CoGe  
| None
|-
|-
| &nbsp; 2  
| &nbsp; 2  
| [[Visually comparing bacteria and mammal genomes]]  
| [[Visually comparing bacteria and mammal genomes|Visually Comparing Genomes]]  
| Learn how to generate a pictorial representation of genomes
| Learn how to generate a pictorial representation of genomes  
| [http://www.youtube.com/watch?v=obCu1bCFQdk&feature=player_embedded#! OrganismView] &amp; [http://www.youtube.com/watch?v=iZ9V68LQKuM&feature=player_embedded GenomeView]
|-
|-
| &nbsp; 3  
| &nbsp; 3  
| [[Computationally Comparing Different Genomes]]  
| [[Computationally Comparing Different Genomes]]  
| Learn how to have computers align portions of DNA from one organism to another
| Learn how to have computers compare DNA from different organisms<br>
| [[FastaView|FastaView]], [http://www.youtube.com/watch?v=qdkgrtXySlI&feature=player_embedded CoGeBlast], [http://www.youtube.com/watch?v=0FE_ylQqBJc&feature=player_embedded GEvo]
|-
|-
| &nbsp; 4  
| &nbsp; 4  
|  
| [[Synteny: Getting the Big Picture]]<br>
|  
| Learn about a great way of comparing two complete genomes (syntenic dot plots)<br>
| [http://www.youtube.com/watch?v=I-dUsMuIkMg&feature=player_embedded SynMap]
|}
 
<br>
 
'''Advanced'''<br>
 
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! scope="col" | #
! scope="col" | Name
! scope="col" | Description
|-
| &nbsp;1
| Identifying Transposons ([[TestMN]])<br>
| Learn how to identify transposon which have never been discovered before
|-
|-
| &nbsp; 5
| &nbsp;2
|  
|  
|  
|  
|-
|-
| &nbsp; 6
| &nbsp;3
|  
|  
|  
|  
|}
|}
&nbsp;
&nbsp;

Latest revision as of 22:11, 21 June 2010

Overview

This tutorial is intended as a walkthrough for high school students to help them navigate and fully utilize the CoGe program while learning about comparative genomics.

Lessons

Basics

# Name Description   New Program Used
  1  Required Background Information Explains the basic genetic concepts and vocabulary required to use CoGe None
  2 Visually Comparing Genomes Learn how to generate a pictorial representation of genomes OrganismView & GenomeView
  3 Computationally Comparing Different Genomes Learn how to have computers compare DNA from different organisms
 FastaView, CoGeBlast, GEvo
  4 Synteny: Getting the Big Picture
 Learn about a great way of comparing two complete genomes (syntenic dot plots)
 SynMap


Advanced

# Name Description
 1 Identifying Transposons (TestMN)
 Learn how to identify transposon which have never been discovered before
 2
 3

 

 

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