Tutorial for High School Students: Difference between revisions
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== Overview == | == Overview == | ||
This tutorial is intended as a walkthrough for high school students to help them navigate and fully utilize the CoGe program. | This tutorial is intended as a walkthrough for high school students to help them navigate and fully utilize the CoGe program while learning about [http://en.wikipedia.org/wiki/Comparative_genomics comparative genomics]. | ||
== Lessons == | == Lessons == | ||
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'''Basics'''<br> | '''Basics'''<br> | ||
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| [[Computationally Comparing Different Genomes]] | | [[Computationally Comparing Different Genomes]] | ||
| Learn how to have computers compare DNA from different organisms<br> | | Learn how to have computers compare DNA from different organisms<br> | ||
| FastaView, [http://www.youtube.com/watch?v=qdkgrtXySlI&feature=player_embedded CoGeBlast], [http://www.youtube.com/watch?v=0FE_ylQqBJc&feature=player_embedded GEvo] | | [[FastaView|FastaView]], [http://www.youtube.com/watch?v=qdkgrtXySlI&feature=player_embedded CoGeBlast], [http://www.youtube.com/watch?v=0FE_ylQqBJc&feature=player_embedded GEvo] | ||
|- | |- | ||
| 4 | | 4 | ||
| Synteny: | | [[Synteny: Getting the Big Picture]]<br> | ||
| Learn about a great way of comparing two complete genomes (syntenic dot plots)<br> | | Learn about a great way of comparing two complete genomes (syntenic dot plots)<br> | ||
| [http://www.youtube.com/watch?v=I-dUsMuIkMg&feature=player_embedded SynMap] | | [http://www.youtube.com/watch?v=I-dUsMuIkMg&feature=player_embedded SynMap] | ||
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'''Advanced'''<br> | '''Advanced'''<br> | ||
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| Identifying Transposons | | Identifying Transposons ([[TestMN]])<br> | ||
| Learn how to identify transposon which have never been discovered before | | Learn how to identify transposon which have never been discovered before | ||
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Latest revision as of 22:11, 21 June 2010
Overview
This tutorial is intended as a walkthrough for high school students to help them navigate and fully utilize the CoGe program while learning about comparative genomics.
Lessons
Basics
| # | Name | Description | New Program Used |
|---|---|---|---|
| 1 | Required Background Information | Explains the basic genetic concepts and vocabulary required to use CoGe | None |
| 2 | Visually Comparing Genomes | Learn how to generate a pictorial representation of genomes | OrganismView & GenomeView |
| 3 | Computationally Comparing Different Genomes | Learn how to have computers compare DNA from different organisms |
FastaView, CoGeBlast, GEvo |
| 4 | Synteny: Getting the Big Picture |
Learn about a great way of comparing two complete genomes (syntenic dot plots) |
SynMap |
Advanced
| # | Name | Description |
|---|---|---|
| 1 | Identifying Transposons (TestMN) |
Learn how to identify transposon which have never been discovered before |
| 2 | ||
| 3 |