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| One of the major difficulties with genomic data is creating visual representations that enable people to quickly and easily identify patterns. This is a combination of balancing:
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| *how much data to show
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| *the detail of the data
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| *the arrangement of the data
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| *the coloration of the data
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| Here is an example of a first pass visualization of a codon substitution matrix generated by [[SynSub]] and the refined version. The refined version collapsed table margins and used a color schema to enable differentiation of numerical data across a wide range of values.
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| [[Image:SynSub data visualization fist pass.png|thumb|1000px|center|First pass]]
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| [[Image:SynSub data visualization refined.png|thumb|1000px|center|First pass]]
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