Twig2Genome: Difference between revisions
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** SynMap visualization with unassembled contigs: http://genomevolution.org/r/4hzq | ** SynMap visualization with unassembled contigs: http://genomevolution.org/r/4hzq | ||
** SynMap visualization without unassembled contigs: http://genomevolution.org/r/4i6l | ** SynMap visualization without unassembled contigs: http://genomevolution.org/r/4i6l | ||
** Link to SPA: http://data.iplantcollaborative.org/quickshare/ | ** Link to SPA: http://data.iplantcollaborative.org/quickshare/c84efbac1cc31a53/creosote-CA-peach-SPA-10-20-2-8400-16855.tar.gz | ||
Latest revision as of 14:33, 12 February 2012
Objective
Write a paper on the twig2genome concept: rapidly creating a usable low-quality draft assembly from a complex plant genome.
Methods
Genome assembly
Celera Assembly (Haibao Tang): http://genomevolution.org/CoGe/OrganismView.pl?dsgid=16855
Syntenic path assembly (SPA)
- To peach:
- SynMap visualization with unassembled contigs: http://genomevolution.org/r/4hzq
- SynMap visualization without unassembled contigs: http://genomevolution.org/r/4i6l
- Link to SPA: http://data.iplantcollaborative.org/quickshare/c84efbac1cc31a53/creosote-CA-peach-SPA-10-20-2-8400-16855.tar.gz