SynFind Syntenic Depth Examples: Difference between revisions
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| Syntenic Dopltot | | Syntenic Dopltot | ||
| Syntenic Depth Calculation | | Syntenic Depth Calculation | ||
| Known History | |||
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| [[Image:Screen shot 2012-03-27 at 5.39.50 PM.png|400px]] | | [[Image:Screen shot 2012-03-27 at 5.39.50 PM.png|400px]] | ||
| [[Image: | | [[Image:Screen shot 2012-03-27 at 5.40.52 PM.png|300px]] | ||
| 1:1 syntenic depth | |||
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| [[Image:Screen shot 2012-03-27 at 5.32.45 PM.png|400px]] | | [[Image:Screen shot 2012-03-27 at 5.32.45 PM.png|400px]] | ||
| [[Image:Screen shot 2012-03-27 at 5.29.54 PM.png|300px]] | | [[Image:Screen shot 2012-03-27 at 5.29.54 PM.png|300px]] | ||
| Obvious 1:1 orthologous regions. Also has a "haze" of secondary synteny is due to the most recent vertebrate whole genome duplication even (1R). There is an older whole genome duplication too (2R). | |||
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| [[Image:Screen shot 2012-03-27 at 2.53.56 PM.png|400px]] | | [[Image:Screen shot 2012-03-27 at 2.53.56 PM.png|400px]] | ||
| [[Image: | | [[Image:Screen shot 2012-03-28 at 8.48.43 AM.png|300px]] | ||
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Obvious 2:2 depth. | |||
Share a recent whole genome duplication. Also share older whole genome duplictions (at least one) | |||
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| [[Image: | | [[Image:Screen shot 2012-03-28 at 8.46.49 AM.png|400px]] | ||
| [[Image:Screen shot 2012-03-28 at 8.47.57 AM.png|300px]] | |||
| 1:1 orthologous regions. Secondary syntenic "haze" form 1R. | |||
|} | |} | ||
Latest revision as of 01:08, 31 May 2012
| Syntenic Dopltot | Syntenic Depth Calculation | Known History |
|
|
1:1 syntenic depth |
|
|
Obvious 1:1 orthologous regions. Also has a "haze" of secondary synteny is due to the most recent vertebrate whole genome duplication even (1R). There is an older whole genome duplication too (2R). |
|
|
Obvious 2:2 depth. Share a recent whole genome duplication. Also share older whole genome duplictions (at least one) |
|
|
1:1 orthologous regions. Secondary syntenic "haze" form 1R. |