Difference between revisions of "Carnivorous plants"

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==Gene model evidence==
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[[Genlisea aurea gene models]]
  
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==Evidence that Utricularia has had a whole genome duplication following its divergence with tomato: fractionation of gene content in two separate genomic regions==
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==Lentibulariacceae-specific WGD characterization==
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[[Genlisea intragenomic analyses]]
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[[File:Screen shot 2012-02-01 at 2.48.16 PM.png|thumb|center|600px|GEvo analylsis of 2xUtricularia regions to 1xTomato regions. The Utricularia regions are syntenic to the same reigon of tomato and show extensive fractionation. Results may be regenerated at http://genomevolution.org/r/4gi8]]
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[[Utricularia intragenomic analyses]]:  Evidence that Utricularia has had 2 whole genome duplications since divergence with tomato
  
 
==Differential fractionation of Utricularia and Genlisea (may be due to the polyploidy noted above)==
 
==Differential fractionation of Utricularia and Genlisea (may be due to the polyploidy noted above)==
 
[[File:Screen shot 2012-01-31 at 2.53.17 PM.png|thumb|center|600px|GEvo analysis of Genlisea and Utricularia to the orthologous outgroup region of Mimulus. Genlisea and Utricularia demostrate a pattern of differential fractionation. Results can be regenerated at: http://genomevolution.org/r/4gbw]]
 
[[File:Screen shot 2012-01-31 at 2.53.17 PM.png|thumb|center|600px|GEvo analysis of Genlisea and Utricularia to the orthologous outgroup region of Mimulus. Genlisea and Utricularia demostrate a pattern of differential fractionation. Results can be regenerated at: http://genomevolution.org/r/4gbw]]
  
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==[[Syntenic Depth]] Analysis==
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[[Potato-Utricularia-Genlisea Syntenic Depth]]
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[[Tomato-Utricularia Syntenic Depth]]
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==Synteny between Genlisea and Utricularia==
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* http://genomevolution.org/r/4gta
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* http://genomevolution.org/r/4gte
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* http://genomevolution.org/r/4gtg
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* http://genomevolution.org/r/4gth
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* http://genomevolution.org/r/4gtj
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* http://genomevolution.org/r/4gtk
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* http://genomevolution.org/r/4gyi
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* http://genomevolution.org/r/4gyg
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* http://genomevolution.org/r/4gye
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* http://genomevolution.org/r/4gyc
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* http://genomevolution.org/r/4gya
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* http://genomevolution.org/r/4gy8
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* http://genomevolution.org/r/4gy6
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==Comparison to [[pseudoassemblies]]==
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[[Utricularia and Genlisea pseudoassembly]]
  
 
==Syntenic dotplots==
 
==Syntenic dotplots==
  
 
[[Utricularia Syntenic Dotplots]]
 
[[Utricularia Syntenic Dotplots]]
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==Phylogeny==
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===polyploidy events===
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[[File:Screen shot 2012-02-02 at 4.47.14 PM.png]]
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===Evidence===
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*[[paleohexaploidy]]
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*[[Astrid-specific WGD]]
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===Master===
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[[File:Screen shot 2012-02-02 at 4.46.18 PM.png|thumb|500px|left]]

Latest revision as of 17:44, 19 June 2012

Gene model evidence

Genlisea aurea gene models

Lentibulariacceae-specific WGD characterization

Genlisea intragenomic analyses

Utricularia intragenomic analyses: Evidence that Utricularia has had 2 whole genome duplications since divergence with tomato

Differential fractionation of Utricularia and Genlisea (may be due to the polyploidy noted above)

GEvo analysis of Genlisea and Utricularia to the orthologous outgroup region of Mimulus. Genlisea and Utricularia demostrate a pattern of differential fractionation. Results can be regenerated at: http://genomevolution.org/r/4gbw

Syntenic Depth Analysis

Potato-Utricularia-Genlisea Syntenic Depth

Tomato-Utricularia Syntenic Depth

Synteny between Genlisea and Utricularia

Comparison to pseudoassemblies

Utricularia and Genlisea pseudoassembly

Syntenic dotplots

Utricularia Syntenic Dotplots

Phylogeny

polyploidy events

Screen shot 2012-02-02 at 4.47.14 PM.png

Evidence

Master

Screen shot 2012-02-02 at 4.46.18 PM.png
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