Difference between revisions of "Carnivorous plants"
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(→Evidence that Utricularia has had a whole genome duplication following its divergence with tomato: fractionation of gene content in two distinct Utricularia genomic regions) |
(→Syntenic Depth Analysis) |
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| − | == | + | ==Gene model evidence== |
| + | [[Genlisea aurea gene models]] | ||
| − | + | ==Lentibulariacceae-specific WGD characterization== | |
| + | [[Genlisea intragenomic analyses]] | ||
| − | [[ | + | [[Utricularia intragenomic analyses]]: Evidence that Utricularia has had 2 whole genome duplications since divergence with tomato |
==Differential fractionation of Utricularia and Genlisea (may be due to the polyploidy noted above)== | ==Differential fractionation of Utricularia and Genlisea (may be due to the polyploidy noted above)== | ||
[[File:Screen shot 2012-01-31 at 2.53.17 PM.png|thumb|center|600px|GEvo analysis of Genlisea and Utricularia to the orthologous outgroup region of Mimulus. Genlisea and Utricularia demostrate a pattern of differential fractionation. Results can be regenerated at: http://genomevolution.org/r/4gbw]] | [[File:Screen shot 2012-01-31 at 2.53.17 PM.png|thumb|center|600px|GEvo analysis of Genlisea and Utricularia to the orthologous outgroup region of Mimulus. Genlisea and Utricularia demostrate a pattern of differential fractionation. Results can be regenerated at: http://genomevolution.org/r/4gbw]] | ||
| + | |||
| + | ==[[Syntenic Depth]] Analysis== | ||
| + | |||
| + | [[Potato-Utricularia-Genlisea Syntenic Depth]] | ||
| + | |||
| + | [[Tomato-Utricularia Syntenic Depth]] | ||
==Synteny between Genlisea and Utricularia== | ==Synteny between Genlisea and Utricularia== | ||
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* http://genomevolution.org/r/4gy8 | * http://genomevolution.org/r/4gy8 | ||
* http://genomevolution.org/r/4gy6 | * http://genomevolution.org/r/4gy6 | ||
| + | |||
| + | ==Comparison to [[pseudoassemblies]]== | ||
| + | [[Utricularia and Genlisea pseudoassembly]] | ||
==Syntenic dotplots== | ==Syntenic dotplots== | ||
Latest revision as of 17:44, 19 June 2012
Contents
- 1 Gene model evidence
- 2 Lentibulariacceae-specific WGD characterization
- 3 Differential fractionation of Utricularia and Genlisea (may be due to the polyploidy noted above)
- 4 Syntenic Depth Analysis
- 5 Synteny between Genlisea and Utricularia
- 6 Comparison to pseudoassemblies
- 7 Syntenic dotplots
- 8 Phylogeny
Gene model evidence
Lentibulariacceae-specific WGD characterization
Genlisea intragenomic analyses
Utricularia intragenomic analyses: Evidence that Utricularia has had 2 whole genome duplications since divergence with tomato
Differential fractionation of Utricularia and Genlisea (may be due to the polyploidy noted above)
GEvo analysis of Genlisea and Utricularia to the orthologous outgroup region of Mimulus. Genlisea and Utricularia demostrate a pattern of differential fractionation. Results can be regenerated at: http://genomevolution.org/r/4gbw
Syntenic Depth Analysis
Potato-Utricularia-Genlisea Syntenic Depth
Tomato-Utricularia Syntenic Depth
Synteny between Genlisea and Utricularia
- http://genomevolution.org/r/4gta
- http://genomevolution.org/r/4gte
- http://genomevolution.org/r/4gtg
- http://genomevolution.org/r/4gth
- http://genomevolution.org/r/4gtj
- http://genomevolution.org/r/4gtk
- http://genomevolution.org/r/4gyi
- http://genomevolution.org/r/4gyg
- http://genomevolution.org/r/4gye
- http://genomevolution.org/r/4gyc
- http://genomevolution.org/r/4gya
- http://genomevolution.org/r/4gy8
- http://genomevolution.org/r/4gy6
Comparison to pseudoassemblies
Utricularia and Genlisea pseudoassembly
Syntenic dotplots
Phylogeny
polyploidy events
