Example data for EPIC-CoGe: Difference between revisions

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Created page with 'Example data for EPIC-CoGe is based on the genome of E. coli. These datasets are relatively small *Fasta file (genome): http://de.iplantcollaborative.org/dl/d/9A58E036-A0C9-4499...'
 
 
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Example data for EPIC-CoGe is based on the genome of E. coli.  These datasets are relatively small
===Example data for EPIC-CoGe is based on the genome of E. coli.  These datasets are relatively small===
*Fasta file (genome): http://de.iplantcollaborative.org/dl/d/9A58E036-A0C9-4499-9F3D-73F9D2A812EF/genome_7112.faa
*Fasta file (genome): http://de.iplantcollaborative.org/dl/d/9A58E036-A0C9-4499-9F3D-73F9D2A812EF/genome_7112.faa
*GFF file (structural annotations): http://de.iplantcollaborative.org/dl/d/EA6DCAA5-3791-484F-8725-DC0DB6CACF23/7122-structural-annotations.gff
*GFF file (structural annotations): http://de.iplantcollaborative.org/dl/d/EA6DCAA5-3791-484F-8725-DC0DB6CACF23/7122-structural-annotations.gff
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*CSV file (high density expression data): http://de.iplantcollaborative.org/dl/d/CEC021DC-777B-41F8-9D1E-30078EE9FEBE/7112-hi.csv
*CSV file (high density expression data): http://de.iplantcollaborative.org/dl/d/CEC021DC-777B-41F8-9D1E-30078EE9FEBE/7112-hi.csv


This short video shows how to:
===This short video shows how to load the above data:===
# Load a genome from a fasta file
# Load structural annotations from a GFF file
# Load variation (SNP) data from a vcf file
# Load mapped reads from a BAM file
# Load expression data from a CSV file


<youtube>JPZ8IrPnh_8</youtube>
<youtube>JPZ8IrPnh_8</youtube>

Latest revision as of 04:27, 3 March 2014

Example data for EPIC-CoGe is based on the genome of E. coli. These datasets are relatively small

This short video shows how to load the above data:

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