Experiment Metadata: Difference between revisions
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The experiment metadata file is a tab-separated file | The experiment metadata file is a tab-separated file ending in .txt that contains a header line followed by a metadata line for each experiment. There are some required columns and free-form optional columns. | ||
Required Columns: | <span style="color:red">Required Columns (in order as below):</span> | ||
* | * Filename: the name of the file containing the experiment's data | ||
* | ** supported file types: .csv, .bam, .bed, .gff, .vcf ... see [[LoadExperiment]] for more info | ||
* Name: the name of the experiment | |||
Optional Columns (in any order): | Optional Columns (in any order): | ||
| Line 10: | Line 11: | ||
* Version: the version number | * Version: the version number | ||
* Restricted: restrict the data from public access ("yes" or "no", default is no) | * Restricted: restrict the data from public access ("yes" or "no", default is no) | ||
* Add your own | |||
Note: adding "_link" to the end of the field name denotes a link for another column (i.e., columns "citation" and "citation_link") | |||
<hr> | |||
Example:<br> | Example:<br> | ||
[[File:Screen_Shot_2014-01-23_at_2.53.15_PM.png]] | [[File:Screen_Shot_2014-01-23_at_2.53.15_PM.png]] | ||
Looks like this: http://genomevolution.org/CoGe/ExperimentView.pl?eid=193 | |||
Latest revision as of 00:44, 16 September 2014
The experiment metadata file is a tab-separated file ending in .txt that contains a header line followed by a metadata line for each experiment. There are some required columns and free-form optional columns.
Required Columns (in order as below):
- Filename: the name of the file containing the experiment's data
- supported file types: .csv, .bam, .bed, .gff, .vcf ... see LoadExperiment for more info
- Name: the name of the experiment
Optional Columns (in any order):
- Description: a description of the experiment
- Source: the source of the data file (i.e., JGI)
- Version: the version number
- Restricted: restrict the data from public access ("yes" or "no", default is no)
- Add your own
Note: adding "_link" to the end of the field name denotes a link for another column (i.e., columns "citation" and "citation_link")
Example:
Looks like this: http://genomevolution.org/CoGe/ExperimentView.pl?eid=193