Medically Relevant Genomes in CoGe

List of Medical Model Genomes

Phylum	Class	Species	CoGe Genome Link	Related Genomes Available	Research Interest Examples
Chordata (Vertebrates)
	Mammals	Human	Homo sapiens v 38 (NCBI)	Homo subspecies	Disease modeling, ecology, genetic variation
		Mouse	Mus musculus C57BL/6J v GRCm28.p3 (NCBI)	Mus subspecies	Disease modeling, gene function
		Rat	Rattus norvegicus v 6.0 (Ensembl)	Rattus species	Disease modeling, gene function
		Rabbit	Oryctolagus cuniculus v 2.0 (Ensembl)	Rabbit versions	Pharmaceutical testing, immune response
		Guinea pig	Cavia porcellus inbred line 2N v 3.0 (Ensembl)	Guinea pig versions	Human disease, human immune response, toxicology
		Pig	Sus scrofa v 10.2 (Ensembl)	Sus scrofa versions	Allergen model species, organ model species
	Birds	Chicken	Gallus gallus v 4.74 (Ensembl)	Gallus versions	Agriculture, developmental biology
		Zebra Finch	Taeniopygia guttata v 3.2.4 (BGI/Ensembl)	Taeniopygia versions	Learning, neural biology
		Japanese Quail	Coturnix japonica v 1.0 (NCBI)		Agriculture, developmental biology
	Amphibians & Reptiles	Western Clawed Frog (Xenopus)	Xenopus tropicalis v 4.2.64 (Ensembl)	Xenopus species	Vertebrate developmental biology
	Fish	Zebrafish	Danio rerio (NCBI)	Danio versions	Vertebrate developmental biology, transgenics
		Medaka	Oryzias latipes v 1.0 (NCBI)	Oryzias versions	Vertebrate developmental biology, transgenics
		Cichlids	Maylandia zebra v 1.1 (NCBI)	Cichlid species	Craniofacial development disorders
		Mexican tetra (cave fish)	Astyanax mexicanus v 1.0.2 (NCBI)	Astyanax versions	Eye development and degeneration
		Turquoise killifish	Nothobranchius furzeri GRZ v 1.0 (NCBI)	Nothobranchius species	Aging model species
		Southern platyfish	Xiphophorus maculatus JP163A v 4.4.2	Xiphophorus versions	Melanoma, sexual maturity disorder model species
		Amazon molly	Poecilia formosa v 5.1.2 (NCBI)	Poecilia species	Clonal model species, cancer research model
		Sheepshead minnow	Cyprinodon variegatus v 1.0 (NCBI)	Cyprinodon species	Environmental toxicology model
		Rainbow trout	Oncorhynchus mykiss v 4.0 (Genoscope)	Oncorhynchus versions	Toxicology, liver cancer model
Ecdysozoa
	Insects	Fruit fly	Fruit fly v 6.0 (NCBI)	Drosophila species	Gene function
	Platyhelmenthes	Schmidtea mediterranea	Schmidtea mediterranea v S2F2 (NCBI)		Cellular regeneration model, pluripotent stem cell model
	Nematodes	Caenorhabditis elegans	Caenorhabditis elegans v 9.0 (NCBI)	C. elegans species	Nematode model species, nervous system development model

List of Disease Organism Genomes

Phylum	Class	Species	CoGe Genome Link	Related Genomes Available	Research Interest Examples
Chordata (Vertebrates)
	Mammals	Human	Homo sapiens v 38 (NCBI)	Homo subspecies	Disease modeling, ecology, genetic variation

Links

Notebook containing all medically relevant genomes in CoGe

Notebook containing medical model genomes

Notebook containing disease-causing organism genomes

Notebook containing human endosymbionts