Difference between revisions of "Aspergillus flavus secondary metabolic gene clusters"
From CoGepedia
(Created page with '==Syntenic conservation of secondary metabolite gene clusters== #Gene clusters identified by Doug Brown #Syntenic comparison done with SynMap: http://genomevolution.org/CoGe/SynM...') |
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==Add a custom genome of Metabolic gene clusters from Aspergillus flavus== | ==Add a custom genome of Metabolic gene clusters from Aspergillus flavus== | ||
Genome available at [[OrganismView]]: http://genomevolution.org/CoGe/OrganismView.pl?dsgid=9105 | Genome available at [[OrganismView]]: http://genomevolution.org/CoGe/OrganismView.pl?dsgid=9105 | ||
− | [[Image:Master 7146 9105.CDS-CDS.blastn.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w2000.png|thumb|600px| | + | [[Image:Master 7146 9105.CDS-CDS.blastn.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w2000.png|thumb|600px|center|Syntenic dotplot of Aspergillus flavus versus a minimized genome consisting of only genomic regions containing metabolic gene clusters. Axis coordinates in nucleotides. Analysis can be regenerated at http://genomevolution.org/CoGe/SynMap.pl?dsgid1=7146;dsgid2=9105;c=4;D=20;g=10;A=5;Dm=0;gm=0;w=0;b=1;ft1=1;ft2=1;do1=1;do2=1;do=40;dt=geneorder]] |
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+ | [[Image:Master 7146 9105.CDS-CDS.blastn.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w2000.gene.png|thumb|600px|center|Syntenic dotplot of Aspergillus flavus versus a minimized genome consisting of only genomic regions containing metabolic gene clusters. Axis coordinates in nucleotides. Analysis can be regenerated at Syntenic dotplot of Aspergillus flavus versus a minimized genome consisting of only genomic regions containing metabolic gene clusters. Axis metrics in gene units (not nucleotides). Analysis can be regenerated at: http://genomevolution.org/CoGe/SynMap.pl?dsgid1=7146;dsgid2=9105;c=4;D=20;g=10;A=5;Dm=0;gm=0;w=0;b=1;ft1=1;ft2=1;do1=1;do2=1;do=40;dt=geneorder;am=g ]] |
Latest revision as of 14:18, 27 April 2010
Syntenic conservation of secondary metabolite gene clusters
- Gene clusters identified by Doug Brown
- Syntenic comparison done with SynMap: http://genomevolution.org/CoGe/SynMap.pl?dsgid1=8171;dsgid2=7146;c=4;D=20;g=10;A=5;Dm=;gm=;w=0;b=1;ft1=1;ft2=1;do1=1;do2=1;do=40;dt=geneorder
- Merging of data by custom perl script.
Gene cluster 48
###cluster_48 AFLA_121440 AO070319000038 http://genomevolution.org/CoGe/GEvo.pl?fid1=44880786;fid2=58351035;dsgid1=7146;dsgid2=8171 AFLA_121450 AO070319000037 http://genomevolution.org/CoGe/GEvo.pl?fid1=44880789;fid2=58351040;dsgid1=7146;dsgid2=8171 AFLA_121460 No syntenic gene pair found AFLA_121470 No syntenic gene pair found AFLA_121480 No syntenic gene pair found AFLA_121490 No syntenic gene pair found AFLA_121500 No syntenic gene pair found AFLA_121510 No syntenic gene pair found AFLA_121520 No syntenic gene pair found AFLA_121530 No syntenic gene pair found AFLA_121540 No syntenic gene pair found AFLA_121550 AO070319000034 http://genomevolution.org/CoGe/GEvo.pl?fid1=44880819;fid2=58351062;dsgid1=7146;dsgid2=8171 AFLA_121560 AO070319000033 http://genomevolution.org/CoGe/GEvo.pl?fid1=44880822;fid2=58351065;dsgid1=7146;dsgid2=8171 AFLA_121570 AO070319000031 http://genomevolution.org/CoGe/GEvo.pl?fid1=44880825;fid2=58351069;dsgid1=7146;dsgid2=8171 AFLA_121580 AO070319000030 http://genomevolution.org/CoGe/GEvo.pl?fid1=44880828;fid2=58351073;dsgid1=7146;dsgid2=8171 AFLA_121590 AO070319000029 http://genomevolution.org/CoGe/GEvo.pl?fid1=44880831;fid2=58351078;dsgid1=7146;dsgid2=8171 AFLA_121600 AO070319000028 http://genomevolution.org/CoGe/GEvo.pl?fid1=44880834;fid2=58351082;dsgid1=7146;dsgid2=8171 AFLA_121610 AO070319000027 http://genomevolution.org/CoGe/GEvo.pl?fid1=44880837;fid2=58351086;dsgid1=7146;dsgid2=8171 AFLA_121620 AO070319000026 http://genomevolution.org/CoGe/GEvo.pl?fid1=44880840;fid2=58351093;dsgid1=7146;dsgid2=8171 AFLA_121630 AO070319000025 http://genomevolution.org/CoGe/GEvo.pl?fid1=44880843;fid2=58351096;dsgid1=7146;dsgid2=8171
Add a custom genome of Metabolic gene clusters from Aspergillus flavus
Genome available at OrganismView: http://genomevolution.org/CoGe/OrganismView.pl?dsgid=9105