Difference between revisions of "Carnivorous plants"
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− | [[File:Screen shot 2012-01-31 at | + | ==Gene model evidence== |
− | [[File:Screen shot 2012- | + | [[Genlisea aurea gene models]] |
− | [[File:Screen shot 2012- | + | |
+ | ==Lentibulariacceae-specific WGD characterization== | ||
+ | [[Genlisea intragenomic analyses]] | ||
+ | |||
+ | [[Utricularia intragenomic analyses]]: Evidence that Utricularia has had 2 whole genome duplications since divergence with tomato | ||
+ | |||
+ | ==Differential fractionation of Utricularia and Genlisea (may be due to the polyploidy noted above)== | ||
+ | [[File:Screen shot 2012-01-31 at 2.53.17 PM.png|thumb|center|600px|GEvo analysis of Genlisea and Utricularia to the orthologous outgroup region of Mimulus. Genlisea and Utricularia demostrate a pattern of differential fractionation. Results can be regenerated at: http://genomevolution.org/r/4gbw]] | ||
+ | |||
+ | ==[[Syntenic Depth]] Analysis== | ||
+ | |||
+ | [[Potato-Utricularia-Genlisea Syntenic Depth]] | ||
+ | |||
+ | [[Tomato-Utricularia Syntenic Depth]] | ||
+ | |||
+ | ==Synteny between Genlisea and Utricularia== | ||
+ | * http://genomevolution.org/r/4gta | ||
+ | * http://genomevolution.org/r/4gte | ||
+ | * http://genomevolution.org/r/4gtg | ||
+ | * http://genomevolution.org/r/4gth | ||
+ | * http://genomevolution.org/r/4gtj | ||
+ | * http://genomevolution.org/r/4gtk | ||
+ | * http://genomevolution.org/r/4gyi | ||
+ | * http://genomevolution.org/r/4gyg | ||
+ | * http://genomevolution.org/r/4gye | ||
+ | * http://genomevolution.org/r/4gyc | ||
+ | * http://genomevolution.org/r/4gya | ||
+ | * http://genomevolution.org/r/4gy8 | ||
+ | * http://genomevolution.org/r/4gy6 | ||
+ | |||
+ | ==Comparison to [[pseudoassemblies]]== | ||
+ | [[Utricularia and Genlisea pseudoassembly]] | ||
+ | |||
+ | ==Syntenic dotplots== | ||
+ | |||
+ | [[Utricularia Syntenic Dotplots]] | ||
+ | |||
+ | ==Phylogeny== | ||
+ | ===polyploidy events=== | ||
+ | [[File:Screen shot 2012-02-02 at 4.47.14 PM.png]] | ||
+ | ===Evidence=== | ||
+ | *[[paleohexaploidy]] | ||
+ | *[[Astrid-specific WGD]] | ||
+ | |||
+ | ===Master=== | ||
+ | [[File:Screen shot 2012-02-02 at 4.46.18 PM.png|thumb|500px|left]] |
Latest revision as of 17:44, 19 June 2012
Contents
- 1 Gene model evidence
- 2 Lentibulariacceae-specific WGD characterization
- 3 Differential fractionation of Utricularia and Genlisea (may be due to the polyploidy noted above)
- 4 Syntenic Depth Analysis
- 5 Synteny between Genlisea and Utricularia
- 6 Comparison to pseudoassemblies
- 7 Syntenic dotplots
- 8 Phylogeny
Gene model evidence
Lentibulariacceae-specific WGD characterization
Genlisea intragenomic analyses
Utricularia intragenomic analyses: Evidence that Utricularia has had 2 whole genome duplications since divergence with tomato
Differential fractionation of Utricularia and Genlisea (may be due to the polyploidy noted above)
Syntenic Depth Analysis
Potato-Utricularia-Genlisea Syntenic Depth
Tomato-Utricularia Syntenic Depth
Synteny between Genlisea and Utricularia
- http://genomevolution.org/r/4gta
- http://genomevolution.org/r/4gte
- http://genomevolution.org/r/4gtg
- http://genomevolution.org/r/4gth
- http://genomevolution.org/r/4gtj
- http://genomevolution.org/r/4gtk
- http://genomevolution.org/r/4gyi
- http://genomevolution.org/r/4gyg
- http://genomevolution.org/r/4gye
- http://genomevolution.org/r/4gyc
- http://genomevolution.org/r/4gya
- http://genomevolution.org/r/4gy8
- http://genomevolution.org/r/4gy6
Comparison to pseudoassemblies
Utricularia and Genlisea pseudoassembly