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| | '''James Schnable''' | | '''James Schnable''' |
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| − | I'm [http://pmb.berkeley.edu/profile/jschnable a graduate student in the department of Plant and Microbial Biology at UC-Berkeley] and a member of [http://microscopy.berkeley.edu/~freeling/ the Freeling lab]. My research focuses on comparative grass genomics and the fate of genes following whole genome duplications. | + | I'm a [http://microscopy.berkeley.edu/~freeling/ the Freeling] alumn, now an assistant professor at the University of Nebraska-Lincoln. Visit the [http://www.schnablelab.org/ Schnable Lab website] to learn more about my ongoing research. |
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| − | Here at CoGePedia I maintain the [[Sequenced plant genomes]] and [[Classical Maize Genes]] resources. It's always a struggle to keep them up to date, so please don't hesitate to let me know if you find omissions in either list.
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| − | [http://www.skraelingmountain.com/ Complete online CV] | + | |
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| | = Contact info = | | = Contact info = |
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| − | email: <code><br>jschnable (@) berkeley.edu<br><br></code>Physical Address:<code><br>434 Koshland Hall (Mail: 111 Koshland Hall)<br>University of California-Berkeley<br>Berkeley, CA 94720</code> | + | email: <code><br>schnable (@) unl.edu<br><br></code> |
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| | = Publications = | | = Publications = |
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| − | [http://scholar.google.com/citations?user=cik4JVYAAAAJ An automatically updated list] of James Schnable's publications (Google Scholar profile). | + | [http://scholar.google.com/citations?user=cik4JVYAAAAJ An automatically updated list] of James Schnable's publications (Google Scholar profile). |
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| − | *Freeling M, Woodhouse MR, Subramaniam S, Turco G, Lisch D, '''Schnable JC'''. 2012. "Fractionation mutagenesis and similar consequences of mechanisms removing dispensable or less-expressed DNA in plants." ''Current Opinion in Plant Biology'' DOI: 10.1016/j.pbi.2012.01.015DOI: [http://dx.doi.org/10.1016/j.pbi.2012.01.015 10.1016/j.pbi.2012.01.015]
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| − | *Tang H, Woodhouse MR, Cheng F, '''Schnable JC''', Pedersen BS, Conant GC, Wang X, Freeling M, Pires JC. 2012. Altered patterns of fractionation and exon deletions in Brassica rapa support a two-step model of paleohexaploidy. ''Genetics'' DOI: [http://dx.doi.org/10.1534/genetics.111.137349 10.1534/genetics.111.137349]
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| − | *'''Schnable JC''', Freeling M, Lyons E. 2012. "Genome-wide analysis of syntenic gene deletion in the grasses." ''Genome Biology and Evolution'' DOI: [http://dx.doi.org/10.1093/gbe/evs009 10.1093/gbe/evs009]
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| − | *Zhang W, Wu Y, '''Schnable JC''', Zeng Z, Freeling M, Crawford GE, and Jiang J. 2011. "High-resolution mapping of open chromatin in the rice genome." ''Genome Research'' DOI: [http://dx.doi.org/10.1101/gr.131342.111 10.1101/gr.131342.111]
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| − | *Eichten SR,* Swanson-Wagner RA,* '''Schnable JC''', Waters AJ, Hermanson PJ, Liu S, Yeh C, Jia Y, Gendler K, Freeling M, Schnable PS, Vaughn MW, Springer NM. 2011. "Heritable epigenetic variation among maize inbreds". ''PLoS Genetics'' DOI: [http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002372 10.1371/journal.pgen.1002372]
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| − | *'''Schnable JC''', Lyons E. 2011. "Comparative genomics with maize and other grass: from genes to genomes. "Maydica 56(2) 183-200
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| − | *Tang H, Lyons E, Pedersen B, '''Schnable JC''', Paterson AH, Freeling M. 2011. "Screening synteny blocks in pairwise genome comparisons through integer programming." ''BMC Bioinformatics'' DOI: [http://www.biomedcentral.com/1471-2105/12/102/abstract 10.1186/1471-2105-12-102]
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| − | *'''Schnable JC''', Pedersen BS, Subramaniam S, Freeling M. 2011. "Dose-sensitivity, conserved noncoding sequences and duplicate gene retention through multiple tetraploidies in the grasses." ''Frontiers in Plant Science'' DOI: [http://www.frontiersin.org/plant_genetics_and_genomics/10.3389/fpls.2011.00002/abstract 10.3389/fpls.2011.00002]
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| − | *'''Schnable JC''', Freeling M. 2011. "Genes identifed by visible mutant phenotypes show increased bias towards one of two maize subgenomes." ''PLoS One'' DOI: [http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0017855 10.1371/journal.pone.0017855]
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| − | *'''Schnable JC''', Springer NM, Freeling M. 2011. "Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss.". ''PNAS'' DOI: [http://www.pnas.org/content/108/10/4069.abstract 10.1073/pnas.1101368108]
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| − | *Woodhouse MR*, '''Schnable JC*''', Pedersen BS, Lyons E, Lisch D, Subramaniam S, Freeling M. 2010. "Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homeologs." ''PLoS Biology'' DOI:[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1000409 10.1371/journal.pbio.1000409]
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| − | *The International Brachypodium Initiative. 2010. "Genome sequencing and analysis of the model grass Brachypodium distachyon." ''Nature'' DOI: [http://dx.doi.org/10.1038/nature08747 10.1038/nature08747]
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| − | (*) Authors Contributed Equally
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| − | = Education =
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| − | *2004-2008 B.A. Cornell University. Major: Biology with focuses in Genetics and Plant Biology.
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| − | *2008-present PhD (in progress) University of California-Berkeley. Department of Plant and Microbial Biology.
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