Difference between revisions of "Carnivorous plants"
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==Gene model evidence== | ==Gene model evidence== | ||
+ | [[Genlisea aurea gene models]] | ||
− | == | + | ==Lentibulariacceae-specific WGD characterization== |
+ | [[Genlisea intragenomic analyses]] | ||
− | [[ | + | [[Utricularia intragenomic analyses]]: Evidence that Utricularia has had 2 whole genome duplications since divergence with tomato |
==Differential fractionation of Utricularia and Genlisea (may be due to the polyploidy noted above)== | ==Differential fractionation of Utricularia and Genlisea (may be due to the polyploidy noted above)== | ||
[[File:Screen shot 2012-01-31 at 2.53.17 PM.png|thumb|center|600px|GEvo analysis of Genlisea and Utricularia to the orthologous outgroup region of Mimulus. Genlisea and Utricularia demostrate a pattern of differential fractionation. Results can be regenerated at: http://genomevolution.org/r/4gbw]] | [[File:Screen shot 2012-01-31 at 2.53.17 PM.png|thumb|center|600px|GEvo analysis of Genlisea and Utricularia to the orthologous outgroup region of Mimulus. Genlisea and Utricularia demostrate a pattern of differential fractionation. Results can be regenerated at: http://genomevolution.org/r/4gbw]] | ||
+ | |||
+ | ==[[Syntenic Depth]] Analysis== | ||
+ | |||
+ | [[Potato-Utricularia-Genlisea Syntenic Depth]] | ||
+ | |||
+ | [[Tomato-Utricularia Syntenic Depth]] | ||
==Synteny between Genlisea and Utricularia== | ==Synteny between Genlisea and Utricularia== |
Latest revision as of 17:44, 19 June 2012
Contents
- 1 Gene model evidence
- 2 Lentibulariacceae-specific WGD characterization
- 3 Differential fractionation of Utricularia and Genlisea (may be due to the polyploidy noted above)
- 4 Syntenic Depth Analysis
- 5 Synteny between Genlisea and Utricularia
- 6 Comparison to pseudoassemblies
- 7 Syntenic dotplots
- 8 Phylogeny
Gene model evidence
Lentibulariacceae-specific WGD characterization
Genlisea intragenomic analyses
Utricularia intragenomic analyses: Evidence that Utricularia has had 2 whole genome duplications since divergence with tomato
Differential fractionation of Utricularia and Genlisea (may be due to the polyploidy noted above)
Syntenic Depth Analysis
Potato-Utricularia-Genlisea Syntenic Depth
Tomato-Utricularia Syntenic Depth
Synteny between Genlisea and Utricularia
- http://genomevolution.org/r/4gta
- http://genomevolution.org/r/4gte
- http://genomevolution.org/r/4gtg
- http://genomevolution.org/r/4gth
- http://genomevolution.org/r/4gtj
- http://genomevolution.org/r/4gtk
- http://genomevolution.org/r/4gyi
- http://genomevolution.org/r/4gyg
- http://genomevolution.org/r/4gye
- http://genomevolution.org/r/4gyc
- http://genomevolution.org/r/4gya
- http://genomevolution.org/r/4gy8
- http://genomevolution.org/r/4gy6
Comparison to pseudoassemblies
Utricularia and Genlisea pseudoassembly