Difference between revisions of "Experiment Metadata"
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− | The experiment metadata file is a tab-separated file | + | The experiment metadata file is a tab-separated file ending in .txt that contains a header line followed by a metadata line for each experiment. There are some required columns and free-form optional columns. |
− | + | <span style="color:red">Required Columns (in order as below):</span> | |
− | + | * Filename: the name of the file containing the experiment's data | |
− | + | ** supported file types: .csv, .bam, .bed, .gff, .vcf ... see [[LoadExperiment]] for more info | |
− | + | * Name: the name of the experiment | |
− | + | ||
− | Required Columns: | + | |
− | * | + | |
− | * | + | |
Optional Columns (in any order): | Optional Columns (in any order): | ||
Line 15: | Line 11: | ||
* Version: the version number | * Version: the version number | ||
* Restricted: restrict the data from public access ("yes" or "no", default is no) | * Restricted: restrict the data from public access ("yes" or "no", default is no) | ||
+ | * Add your own | ||
+ | |||
+ | Note: adding "_link" to the end of the field name denotes a link for another column (i.e., columns "citation" and "citation_link") | ||
+ | <hr> | ||
Example:<br> | Example:<br> |
Latest revision as of 18:44, 15 September 2014
The experiment metadata file is a tab-separated file ending in .txt that contains a header line followed by a metadata line for each experiment. There are some required columns and free-form optional columns.
Required Columns (in order as below):
- Filename: the name of the file containing the experiment's data
- supported file types: .csv, .bam, .bed, .gff, .vcf ... see LoadExperiment for more info
- Name: the name of the experiment
Optional Columns (in any order):
- Description: a description of the experiment
- Source: the source of the data file (i.e., JGI)
- Version: the version number
- Restricted: restrict the data from public access ("yes" or "no", default is no)
- Add your own
Note: adding "_link" to the end of the field name denotes a link for another column (i.e., columns "citation" and "citation_link")
Looks like this: http://genomevolution.org/CoGe/ExperimentView.pl?eid=193