Difference between revisions of "Medically Relevant Genomes in CoGe"

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== List of Genomes ==
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== List of Medical Model Genomes ==
  
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{|
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{| class="wikitable"
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|Human
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!|Phylum
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|Mouse
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!|Class
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|Rat
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!|Species
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|Xenopus
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!|CoGe Genome Link
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|Chicken
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!|Related Genomes Available
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|Zebra Finch
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!|Research Interest Examples
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|Japanese Quail
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|-
 
|-
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|rowspan="20"|Chordata (Vertebrates)
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|-
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|rowspan="6"|Mammals
 
|Human
 
|Human
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|[https://genomevolution.org/coge/GenomeInfo.pl?gid=25747 Homo sapiens v 38 (NCBI)]
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|[https://genomevolution.org/coge/OrganismView.pl?org_name=homo%20sapiens Homo subspecies]
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|Disease modeling, ecology, genetic variation
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|-
 
|Mouse
 
|Mouse
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|[https://genomevolution.org/coge/GenomeInfo.pl?gid=7073 Mus musculus C57BL/6J v GRCm28.p3 (NCBI)]
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|[https://genomevolution.org/coge/OrganismView.pl?org_name=mus%20musculus Mus subspecies]
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|Disease modeling, gene function
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|-
 
|Rat
 
|Rat
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|Xenopus
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|[https://genomevolution.org/coge/GenomeInfo.pl?embed=&gid=26049 Rattus norvegicus v 6.0 (Ensembl)]
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|[https://genomevolution.org/coge/OrganismView.pl?org_name=rattus Rattus species]
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|Disease modeling, gene function
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|-
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|Rabbit
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|[https://genomevolution.org/coge/GenomeInfo.pl?embed=&gid=26055 Oryctolagus cuniculus v 2.0 (Ensembl)]
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|[https://genomevolution.org/coge/OrganismView.pl?org_name=oryctolagus Rabbit versions]
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|Pharmaceutical testing, immune response
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|-
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|Guinea pig
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|[https://genomevolution.org/coge/GenomeInfo.pl?embed=&gid=26056 Cavia porcellus inbred line 2N v 3.0 (Ensembl)]
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|[https://genomevolution.org/coge/OrganismView.pl?org_name=cavia%20porcellus Guinea pig versions]
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|Human disease, human immune response, toxicology
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|-
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|Pig
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|[https://genomevolution.org/coge/GenomeInfo.pl?embed=&gid=26057 Sus scrofa v 10.2 (Ensembl)]
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|[https://genomevolution.org/coge/OrganismView.pl?org_name=sus%20scrofa Sus scrofa versions]
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|Allergen model species, organ model species
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|-
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|rowspan="3"|Birds
 
|Chicken
 
|Chicken
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|[https://genomevolution.org/coge/GenomeInfo.pl?gid=22736 Gallus gallus v 4.74 (Ensembl)]
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|[https://genomevolution.org/coge/OrganismView.pl?org_name=gallus Gallus versions]
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|Agriculture, developmental biology
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|-
 
|Zebra Finch
 
|Zebra Finch
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|[https://genomevolution.org/coge/GenomeInfo.pl?gid=19545 Taeniopygia guttata v 3.2.4 (BGI/Ensembl)]
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|[https://genomevolution.org/coge/OrganismView.pl?org_name=Taeniopygia Taeniopygia versions]
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|Learning, neural biology
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|-
 
|Japanese Quail
 
|Japanese Quail
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|[https://genomevolution.org/coge/GenomeInfo.pl?gid=26048 Coturnix japonica v 1.0 (NCBI)]
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|
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|Agriculture, developmental biology
 
|-
 
|-
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|rowspan="1"|Amphibians & Reptiles
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|Western Clawed Frog (Xenopus)
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|[https://genomevolution.org/coge/GenomeInfo.pl?gid=12392 Xenopus tropicalis v 4.2.64 (Ensembl)]
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|[https://genomevolution.org/coge/OrganismView.pl?org_name=xenopus Xenopus species]
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|Vertebrate developmental biology
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|-
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|rowspan="9"|Fish
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|Zebrafish
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|[https://genomevolution.org/coge/GenomeInfo.pl?gid=25001 Danio rerio (NCBI)]
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|[https://genomevolution.org/coge/OrganismView.pl?org_name=danio%20rerio Danio versions]
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|Vertebrate developmental biology, transgenics
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|-
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|Medaka
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|[https://genomevolution.org/coge/GenomeInfo.pl?gid=25001 Oryzias latipes v 1.0 (NCBI)]
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|[https://genomevolution.org/coge/OrganismView.pl?org_name=oryzias%20latipes Oryzias versions]
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|Vertebrate developmental biology, transgenics
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|-
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|Cichlids
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|[https://genomevolution.org/coge/GenomeInfo.pl?gid=25004 Maylandia zebra v 1.1 (NCBI)]
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|[https://genomevolution.org/coge/OrganismView.pl?org_name=cichlid Cichlid species]
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|Craniofacial development disorders
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|-
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|Mexican tetra (cave fish)
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|[https://genomevolution.org/coge/GenomeInfo.pl?gid=25004 Astyanax mexicanus v 1.0.2 (NCBI)]
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|[https://genomevolution.org/coge/OrganismView.pl?org_name=astyanax Astyanax versions]
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|Eye development and degeneration
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|-
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|Turquoise killifish
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|[https://genomevolution.org/coge/GenomeInfo.pl?embed=&gid=26058 Nothobranchius furzeri GRZ v 1.0 (NCBI)]
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|[https://genomevolution.org/coge/OrganismView.pl?org_name=nothobranchius Nothobranchius species]
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|Aging model species
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|-
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|Southern platyfish
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|[https://genomevolution.org/coge/GenomeInfo.pl?gid=25014 Xiphophorus maculatus JP163A v 4.4.2]
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|[https://genomevolution.org/coge/OrganismView.pl?org_name=xiphophorus Xiphophorus versions]
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|Melanoma, sexual maturity disorder model species
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|-
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|Amazon molly
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|[https://genomevolution.org/coge/GenomeInfo.pl?gid=25009 Poecilia formosa v 5.1.2 (NCBI)]
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|[https://genomevolution.org/coge/OrganismView.pl?org_name=poecilia Poecilia species]
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|Clonal model species, cancer research model
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|-
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|Sheepshead minnow
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|[https://genomevolution.org/coge/GenomeInfo.pl?gid=26063 Cyprinodon variegatus v 1.0 (NCBI)]
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|[https://genomevolution.org/coge/OrganismView.pl?org_name=cyprinodon Cyprinodon species]
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|Environmental toxicology model
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|-
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|Rainbow trout
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|[https://genomevolution.org/coge/GenomeInfo.pl?gid=25073 Oncorhynchus mykiss v 4.0 (Genoscope)]
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|[https://genomevolution.org/coge/OrganismView.pl?org_name=oncorhynchus Oncorhynchus versions]
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|Toxicology, liver cancer model
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|-
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|rowspan="4"|Ecdysozoa
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|-
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|rowspan="1"|Insects
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|Fruit fly
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|[https://genomevolution.org/coge/GenomeInfo.pl?gid=10345 Fruit fly v 6.0 (NCBI)]
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|[https://genomevolution.org/coge/OrganismView.pl?org_name=drosophila Drosophila species]
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|Gene function
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|-
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|rowspan="1"|Platyhelmenthes
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|Schmidtea mediterranea
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|[https://genomevolution.org/coge/GenomeInfo.pl?gid=26065 Schmidtea mediterranea v S2F2 (NCBI)]
 
|
 
|
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|Cellular regeneration model, pluripotent stem cell model
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|-
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|rowspan="1"|Nematodes
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|Caenorhabditis elegans
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|[https://genomevolution.org/coge/GenomeInfo.pl?gid=242 Caenorhabditis elegans v 9.0 (NCBI)]
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|[https://genomevolution.org/coge/OrganismView.pl?org_name=caenorhabditis C. elegans species]
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|Nematode model species, nervous system development model
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|-
 
|}
 
|}
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== List of Disease Organism Genomes ==
 +
{| class="wikitable"
 +
!|Phylum
 +
!|Class
 +
!|Species
 +
!|CoGe Genome Link
 +
!|Related Genomes Available
 +
!|Research Interest Examples
 +
|-
 +
|rowspan="20"|Chordata (Vertebrates)
 +
|-
 +
|rowspan="6"|Mammals
 +
|Human
 +
|[https://genomevolution.org/coge/GenomeInfo.pl?gid=25747 Homo sapiens v 38 (NCBI)]
 +
|[https://genomevolution.org/coge/OrganismView.pl?org_name=homo%20sapiens Homo subspecies]
 +
|Disease modeling, ecology, genetic variation
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|-
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|}
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 +
== List of Human Endosymbiont Genomes ==
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 +
== Links ==
 +
Notebook containing all medically relevant genomes in CoGe
 +
 +
Notebook containing medical model genomes
 +
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Notebook containing disease-causing organism genomes
 +
 +
Notebook containing human endosymbionts
 +
 +
=== Note: If you would like a genome added to this list please contact coge.genome (at) gmail.com ===

Latest revision as of 15:32, 28 July 2015

List of Medical Model Genomes

Phylum Class Species CoGe Genome Link Related Genomes Available Research Interest Examples
Chordata (Vertebrates)
Mammals Human Homo sapiens v 38 (NCBI) Homo subspecies Disease modeling, ecology, genetic variation
Mouse Mus musculus C57BL/6J v GRCm28.p3 (NCBI) Mus subspecies Disease modeling, gene function
Rat Rattus norvegicus v 6.0 (Ensembl) Rattus species Disease modeling, gene function
Rabbit Oryctolagus cuniculus v 2.0 (Ensembl) Rabbit versions Pharmaceutical testing, immune response
Guinea pig Cavia porcellus inbred line 2N v 3.0 (Ensembl) Guinea pig versions Human disease, human immune response, toxicology
Pig Sus scrofa v 10.2 (Ensembl) Sus scrofa versions Allergen model species, organ model species
Birds Chicken Gallus gallus v 4.74 (Ensembl) Gallus versions Agriculture, developmental biology
Zebra Finch Taeniopygia guttata v 3.2.4 (BGI/Ensembl) Taeniopygia versions Learning, neural biology
Japanese Quail Coturnix japonica v 1.0 (NCBI) Agriculture, developmental biology
Amphibians & Reptiles Western Clawed Frog (Xenopus) Xenopus tropicalis v 4.2.64 (Ensembl) Xenopus species Vertebrate developmental biology
Fish Zebrafish Danio rerio (NCBI) Danio versions Vertebrate developmental biology, transgenics
Medaka Oryzias latipes v 1.0 (NCBI) Oryzias versions Vertebrate developmental biology, transgenics
Cichlids Maylandia zebra v 1.1 (NCBI) Cichlid species Craniofacial development disorders
Mexican tetra (cave fish) Astyanax mexicanus v 1.0.2 (NCBI) Astyanax versions Eye development and degeneration
Turquoise killifish Nothobranchius furzeri GRZ v 1.0 (NCBI) Nothobranchius species Aging model species
Southern platyfish Xiphophorus maculatus JP163A v 4.4.2 Xiphophorus versions Melanoma, sexual maturity disorder model species
Amazon molly Poecilia formosa v 5.1.2 (NCBI) Poecilia species Clonal model species, cancer research model
Sheepshead minnow Cyprinodon variegatus v 1.0 (NCBI) Cyprinodon species Environmental toxicology model
Rainbow trout Oncorhynchus mykiss v 4.0 (Genoscope) Oncorhynchus versions Toxicology, liver cancer model
Ecdysozoa
Insects Fruit fly Fruit fly v 6.0 (NCBI) Drosophila species Gene function
Platyhelmenthes Schmidtea mediterranea Schmidtea mediterranea v S2F2 (NCBI) Cellular regeneration model, pluripotent stem cell model
Nematodes Caenorhabditis elegans Caenorhabditis elegans v 9.0 (NCBI) C. elegans species Nematode model species, nervous system development model

List of Disease Organism Genomes

Phylum Class Species CoGe Genome Link Related Genomes Available Research Interest Examples
Chordata (Vertebrates)
Mammals Human Homo sapiens v 38 (NCBI) Homo subspecies Disease modeling, ecology, genetic variation

List of Human Endosymbiont Genomes

Links

Notebook containing all medically relevant genomes in CoGe

Notebook containing medical model genomes

Notebook containing disease-causing organism genomes

Notebook containing human endosymbionts

Note: If you would like a genome added to this list please contact coge.genome (at) gmail.com

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