Difference between revisions of "Medically Relevant Genomes in CoGe"

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== List of Disease Organism Genomes ==
 
== List of Disease Organism Genomes ==
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{| class="wikitable"
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!|Phylum
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!|Class
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!|Species
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!|CoGe Genome Link
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!|Related Genomes Available
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!|Research Interest Examples
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|rowspan="20"|Chordata (Vertebrates)
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|-
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|rowspan="6"|Mammals
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|Human
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|[https://genomevolution.org/coge/GenomeInfo.pl?gid=25747 Homo sapiens v 38 (NCBI)]
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|[https://genomevolution.org/coge/OrganismView.pl?org_name=homo%20sapiens Homo subspecies]
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|Disease modeling, ecology, genetic variation
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|}
  
 
== List of Human Endosymbiont Genomes ==
 
== List of Human Endosymbiont Genomes ==

Latest revision as of 14:32, 28 July 2015

List of Medical Model Genomes

Phylum Class Species CoGe Genome Link Related Genomes Available Research Interest Examples
Chordata (Vertebrates)
Mammals Human Homo sapiens v 38 (NCBI) Homo subspecies Disease modeling, ecology, genetic variation
Mouse Mus musculus C57BL/6J v GRCm28.p3 (NCBI) Mus subspecies Disease modeling, gene function
Rat Rattus norvegicus v 6.0 (Ensembl) Rattus species Disease modeling, gene function
Rabbit Oryctolagus cuniculus v 2.0 (Ensembl) Rabbit versions Pharmaceutical testing, immune response
Guinea pig Cavia porcellus inbred line 2N v 3.0 (Ensembl) Guinea pig versions Human disease, human immune response, toxicology
Pig Sus scrofa v 10.2 (Ensembl) Sus scrofa versions Allergen model species, organ model species
Birds Chicken Gallus gallus v 4.74 (Ensembl) Gallus versions Agriculture, developmental biology
Zebra Finch Taeniopygia guttata v 3.2.4 (BGI/Ensembl) Taeniopygia versions Learning, neural biology
Japanese Quail Coturnix japonica v 1.0 (NCBI) Agriculture, developmental biology
Amphibians & Reptiles Western Clawed Frog (Xenopus) Xenopus tropicalis v 4.2.64 (Ensembl) Xenopus species Vertebrate developmental biology
Fish Zebrafish Danio rerio (NCBI) Danio versions Vertebrate developmental biology, transgenics
Medaka Oryzias latipes v 1.0 (NCBI) Oryzias versions Vertebrate developmental biology, transgenics
Cichlids Maylandia zebra v 1.1 (NCBI) Cichlid species Craniofacial development disorders
Mexican tetra (cave fish) Astyanax mexicanus v 1.0.2 (NCBI) Astyanax versions Eye development and degeneration
Turquoise killifish Nothobranchius furzeri GRZ v 1.0 (NCBI) Nothobranchius species Aging model species
Southern platyfish Xiphophorus maculatus JP163A v 4.4.2 Xiphophorus versions Melanoma, sexual maturity disorder model species
Amazon molly Poecilia formosa v 5.1.2 (NCBI) Poecilia species Clonal model species, cancer research model
Sheepshead minnow Cyprinodon variegatus v 1.0 (NCBI) Cyprinodon species Environmental toxicology model
Rainbow trout Oncorhynchus mykiss v 4.0 (Genoscope) Oncorhynchus versions Toxicology, liver cancer model
Ecdysozoa
Insects Fruit fly Fruit fly v 6.0 (NCBI) Drosophila species Gene function
Platyhelmenthes Schmidtea mediterranea Schmidtea mediterranea v S2F2 (NCBI) Cellular regeneration model, pluripotent stem cell model
Nematodes Caenorhabditis elegans Caenorhabditis elegans v 9.0 (NCBI) C. elegans species Nematode model species, nervous system development model

List of Disease Organism Genomes

Phylum Class Species CoGe Genome Link Related Genomes Available Research Interest Examples
Chordata (Vertebrates)
Mammals Human Homo sapiens v 38 (NCBI) Homo subspecies Disease modeling, ecology, genetic variation

List of Human Endosymbiont Genomes

Links

Notebook containing all medically relevant genomes in CoGe

Notebook containing medical model genomes

Notebook containing disease-causing organism genomes

Notebook containing human endosymbionts

Note: If you would like a genome added to this list please contact coge.genome (at) gmail.com

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