How to extract genomic features: Difference between revisions
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Created page with 'Extracting genomic features from a genomic region in a genome of interest is easy using GenomeView. All you need to do is: #Find your genome of interest in [[OrganismVie...' |
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===Overview=== | |||
Extracting [[genomic features]] from a genomic region in a genome of interest is easy using [[GenomeView]]. All you need to do is: | Extracting [[genomic features]] from a genomic region in a genome of interest is easy using [[GenomeView]]. All you need to do is: | ||
#Find your genome of interest in [[OrganismView]] or your [[genomic feature]] in [[FeatView]] | #Find your genome of interest in [[OrganismView]] or your [[genomic feature]] in [[FeatView]] | ||
#Visualize the genomic region of interest in [[GenomeView]] | #Visualize the genomic region of interest in [[GenomeView]] | ||
#Select and export a genomic region for automatic feature extraction using [[FeatList]] | #Select and export a genomic region from [[OrganismView]]for automatic feature extraction using [[FeatList]] | ||
#Select the features of interest and send them to [[FastaView]] to get their sequences in fasta format | #Select the features of interest and send them to [[FastaView]] to get their sequences in fasta format | ||
===Find your genome of interest in [[OrganismView]]=== | |||
===Find your [[genomic feature]] in [[FeatView]]=== | |||
===Visualizing a genomic region of interest in [[GenomeView]]=== | |||
===Exporting the features of a genomic region in [[GenomeView]] to [[FeatList]]=== | |||
===Evaluating and selecting genomic features in [[FeatList]]=== | |||
===Exporting selected genomic features from [[FeatList]] to [[FastaView]]=== | |||
===Converting nucleotide sequences to protein sequences for [[CDS]] features=== | |||
===Copying sequences from [[FastaView]] and pasting into another application (e.g. text file)=== | |||
Revision as of 05:31, 2 January 2010
Overview
Extracting genomic features from a genomic region in a genome of interest is easy using GenomeView. All you need to do is:
- Find your genome of interest in OrganismView or your genomic feature in FeatView
- Visualize the genomic region of interest in GenomeView
- Select and export a genomic region from OrganismViewfor automatic feature extraction using FeatList
- Select the features of interest and send them to FastaView to get their sequences in fasta format