CoGeBlast: Difference between revisions
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{{ infobox Application | {{ infobox Application | ||
| logo = [[Image:CoGeBlast-logo.png]] | | logo = [[Image:CoGeBlast-logo.png]] | ||
| image = [[Image:CoGeBlast-Screenshot.png|200px|thumb]] | |||
| caption = CoGeBlast Screenshot | |||
| developer = CoGe Team | | developer = CoGe Team | ||
| analysis = Blast query sequences against genomes stored in CoGe database | | analysis = Blast query sequences against genomes stored in CoGe database | ||
Revision as of 01:53, 4 March 2009
 | |
| Software company | CoGe Team |
|---|---|
| Analysis Type | Blast query sequences against genomes stored in CoGe database |
| Working state | Released |
| Tools Utilized | blastn, tblastn, tblastx, blastz |
| Website | http://synteny.cnr.berkeley.edu/CoGe/CoGeBlast.pl |
CoGeBlast is CoGe's interface to BLAST (Basic Local Alignment Search Tool) and other related algorithms. With CoGeBlast, one can take any query sequence, whether user submitted or requested from the CoGe database, and compare it against any number of genomes in the CoGe database
Introduction
The purpose of CoGeBlast is to blah blah use genomes blah.
Alignment Algorithms
CoGeBlast utilizes a number of variants of the BLAST algorithm originally developed by Altschul et al. [1]
Overview
We have docs for this
Documentation
You should read this if you are confused.
References
- ↑ Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990). "Basic local alignment search tool". J Mol Biol 215 (3): 403–410.doi:. PMID 2231712. http://www-math.mit.edu/~lippert/18.417/papers/altschuletal1990.pdf.
Tutorials
We has them.