GEvo

GEvo - Genome Evolution Analysis

Typical GEvo Analysis
Software company	CoGe Team
Analysis Type	Compare multiple genomic regions for synteny and other forms of genome evolution
Working state	Released
Tools Utilized	blastn, tblastx, blastz, CHAOS, LAGAN, DiAlign 2
Website	http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl

GEvo is CoGe's Genome Evolution Analysis tool, designed to visually compare genomic regions using both local and global alignment algorithms.

Introduction

The purpose of GEvo is to compare multiple genomic regions from any number of organisms using a variety of different sequence comparison algorithms in order to quickly identify patterns of genome evolution

Alignment Algorithms

Current GEvo can use:

• BlastZ: DNA-DNA Local Alignment Algorithm. Good for finding large regions of conserved sequence
• BlastN: DNA-DNA Local Alignment Algorithm. Good for finding small regions of conserved sequence
• TBlastX: Translated DNA-Translated DNA Local Alignment Algorithm. Good for finding small regions of more divergent conserved sequence

Overview

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Documentation

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Tutorials

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