Brassica rapa triploidy: Difference between revisions

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[[Image:Master 10179 10179.CDS-CDS.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w2000.ks.png|thumb|800px|center|Syntenic dotplot of Brassica rapa versus itself. Syntenic dots colored by Ks values. Strong evidence of Brassica rapa's triploidy. Pink: Brassica rapa specific triploidy; Purple: most recent tetaploidy shared with Arabidopsis lineage; Blue: second most recent tetaploidy shared with Arabidopsis lineage.  Result may be regenereated at http://genomevolution.org/r/ntv .]]
[[Image:Master 10179 10179.CDS-CDS.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w2000.ks.png|thumb|800px|left|Syntenic dotplot of Brassica rapa versus itself. Syntenic dots colored by Ks values. Strong evidence of Brassica rapa's triploidy. Pink: Brassica rapa specific triploidy; Purple: most recent tetaploidy shared with Arabidopsis lineage; Blue: second most recent tetaploidy shared with Arabidopsis lineage.  Result may be regenereated at http://genomevolution.org/r/ntv .]]


[[Image:Master 10179 10179.CDS-CDS.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w2000.ks.hist.png|Histogram of Ks values for syntenic gene pairs identified between Brassica rapa and itself. Ks values are log transformed, low values on left (little change); high values on right (more change).  Peaks correspond to genome duplication events.  Colors in this histogram match colors in the syntenic dotplot. Results may be regenerated at http://genomevolution.org/r/ntv .]]
[[Image:Master 10179 10179.CDS-CDS.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w2000.ks.hist.png|thumb|800|left|Histogram of Ks values for syntenic gene pairs identified between Brassica rapa and itself. Ks values are log transformed, low values on left (little change); high values on right (more change).  Peaks correspond to genome duplication events.  Colors in this histogram match colors in the syntenic dotplot. Results may be regenerated at http://genomevolution.org/r/ntv .]]

Revision as of 16:13, 4 August 2010

Syntenic dotplot of Brassica rapa versus itself. Syntenic dots colored by Ks values. Strong evidence of Brassica rapa's triploidy. Pink: Brassica rapa specific triploidy; Purple: most recent tetaploidy shared with Arabidopsis lineage; Blue: second most recent tetaploidy shared with Arabidopsis lineage. Result may be regenereated at http://genomevolution.org/r/ntv .
Histogram of Ks values for syntenic gene pairs identified between Brassica rapa and itself. Ks values are log transformed, low values on left (little change); high values on right (more change). Peaks correspond to genome duplication events. Colors in this histogram match colors in the syntenic dotplot. Results may be regenerated at http://genomevolution.org/r/ntv .
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