Difference between revisions of "Cacao syntenic dotplots"

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[[Image:Master 8400 10997.CDS-genomic.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w2000.cs1.nsd.png|800px|thumb|right|Syntenic dotplot using [[SynMap]] of Cacao (y-axis) versus Peach (x-axis). Results can be regenerated at http://genomevolution.org/r/2h98]]
 
[[Image:Master 8400 10997.CDS-genomic.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w2000.cs1.nsd.png|800px|thumb|right|Syntenic dotplot using [[SynMap]] of Cacao (y-axis) versus Peach (x-axis). Results can be regenerated at http://genomevolution.org/r/2h98]]
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[[Image:Master 8400 10997.CDS-genomic.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w2000.cs1.png|800px|thumb|right|Syntenic dotplot using [[SynMap]] of Cacao (y-axis) versus Peach (x-axis). Green are syntenic matches, gray is any match. Results can be regenerated at http://genomevolution.org/r/2h9j]]
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==Syntenic dotplot between Cacao and Peach genomes==
 
==Syntenic dotplot between Cacao and Peach genomes==
 
The syntenic dotplot shows a strong 1:1 mapping of syntenic regions, and weaker 3:3 mappings of syntenic regions.  This is due to the shared [[paleohexaploidy]] event at the base of the eudicots and the lack of subsequent whole genome duplications events in either lineage.
 
The syntenic dotplot shows a strong 1:1 mapping of syntenic regions, and weaker 3:3 mappings of syntenic regions.  This is due to the shared [[paleohexaploidy]] event at the base of the eudicots and the lack of subsequent whole genome duplications events in either lineage.

Revision as of 10:22, 26 January 2011

Syntenic dotplot using SynMap of Cacao (y-axis) versus Peach (x-axis). Results can be regenerated at http://genomevolution.org/r/2h98
Syntenic dotplot using SynMap of Cacao (y-axis) versus Peach (x-axis). Green are syntenic matches, gray is any match. Results can be regenerated at http://genomevolution.org/r/2h9j


Syntenic dotplot between Cacao and Peach genomes

The syntenic dotplot shows a strong 1:1 mapping of syntenic regions, and weaker 3:3 mappings of syntenic regions. This is due to the shared paleohexaploidy event at the base of the eudicots and the lack of subsequent whole genome duplications events in either lineage.