Contact Page: Difference between revisions

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* [http://bio5.org/ Bio5 Institute at the University of Arizona, Tucson]
* [http://bio5.org/ Bio5 Institute at the University of Arizona, Tucson]
** elyons (@) iplantcollaborative.org
** elyons (@) iplantcollaborative.org
=== Brent Pedersen ===
* Programmer
* [http://pmb.berkeley.edu Department of Plant and Microbial Biology]
* [http://www.berkeley.edu University of California, Berkeley]


=== Shabari Subramaniam ===
=== Shabari Subramaniam ===
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* [http://www.berkeley.edu University of California, Berkeley]
* [http://www.berkeley.edu University of California, Berkeley]
**jschnable (@) berkeley.edu
**jschnable (@) berkeley.edu
=== Haibao Tang ===
* Postdoc
* [http://pmb.berkeley.edu|_blank Department of Plant and Microbial Biology]
* [http://www.berkeley.edu University of California, Berkeley]
** haibao (@) berkeley.edu


== CoGe Development Testers ==  
== CoGe Development Testers ==  


=== Michael Freeling ===
=== Michael Freeling ===
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==Former Team Members==
==Former Team Members==
=== Haibao Tang ===
*Developer of Quota Align algorithm in [[SynMap]]
*Developer of the synteny finding algorithm used in [[SynFind]]
*Much code work behind the scenes to get algorithms working quickly
=== Brent Pedersen ===
*Developer of [[Gobe]] (visualization system used [[GEvo]]
*Developer of [http://code.google.com/p/genome-browser/ OpenGenes] (navigation system used in visualization system for [[GenomeView]])
*Much code work behind the scenes to get algorithms working quickly


=== Joshua Kane ===
=== Joshua Kane ===

Revision as of 00:28, 20 February 2011


Current and past people involved with the CoGe Project.

CoGe Team in the Freeling Lab, Dept. of Plant and Microbial Biology, UC Berkeley

Eric Lyons

Shabari Subramaniam

James Schnable

CoGe Development Testers

Michael Freeling

Damon Lisch

How to cite CoGe?

Eric Lyons, Michael Freeling (2008) How to usefully compare homologous plant genes and chromosomes as DNA sequences The Plant Journal 53 (4) , 661-673

Lyons E, Pedersen B, Kane J, Freeling M (2008) The value of nonmodel genomes and an example using SynMap within CoGe to dissect the hexaploidy that predates rosids. Tropical Plant Biol 1 (3-4) , 181-190

Who do I contact with comments, suggestions, bug reports, general questions, etc?

Eric Lyons: elyons (@) berkeley.edu

Former Team Members

Haibao Tang

  • Developer of Quota Align algorithm in SynMap
  • Developer of the synteny finding algorithm used in SynFind
  • Much code work behind the scenes to get algorithms working quickly

Brent Pedersen

  • Developer of Gobe (visualization system used GEvo
  • Developer of OpenGenes (navigation system used in visualization system for GenomeView)
  • Much code work behind the scenes to get algorithms working quickly

Joshua Kane

Brian Thomas

Sara Castelletti

Dan Hembry