Extra Annotations: Difference between revisions
Jump to navigation
Jump to search
Created page with 'Most genomes within CoGe are annotated only with publicly available gene models however the Freeling Lab has also decorated a number of genomes with additional information. For r...' |
No edit summary |
||
| Line 1: | Line 1: | ||
Most genomes within CoGe are annotated only with publicly available gene models however the Freeling Lab has also decorated a number of genomes with additional information. For reference the specific versions with extra annotation information are listed here. | Most genomes within CoGe are annotated only with publicly available gene models however the Freeling Lab has also decorated a number of genomes with additional information. For reference the specific versions with extra annotation information are listed here. | ||
==Conserved Noncoding Sequence Data== | == Conserved Noncoding Sequence Data == | ||
{| width="650" border="1" cellpadding="1" cellspacing="1" | |||
|- | |||
| Species | |||
| Data set group ID | |||
| Data set ID | |||
| Comparison | |||
| Method | |||
| Full Name | |||
|- | |||
| Arabidopsis | |||
| 3 | |||
| 39598 | |||
| Arabidopsis (homeologs) | |||
| Manual Annotations and the CNS Discovery Pipeline | |||
| Arabidopsis thaliana Col-0 (thale cress) (with CNS) masked repeats 50 | |||
|- | |||
| Peach | |||
| 8400 | |||
| 42478 | |||
| Chocolate (orthologs) | |||
| CNS Discovery Pipeline | |||
| Prunus persica (peach) (with CNS) unmasked | |||
|- | |||
| Chocolate | |||
| 10997 | |||
| 46486 | |||
| Peach (orthologs) | |||
| CNS Discovery Pipeline | |||
| Theobroma cacao (chocolate) Belizian Criollo genotype (B97-61/B2) (with CNS) | |||
|- | |||
| Rice | |||
| 11822 | |||
| 47668 | |||
| Sorghum (orthologs) | |||
| CNS Discovery Pipeline | |||
| Oryza sativa japonica (Rice) (with CNS) masked repeats 50x | |||
|- | |||
| Sorghum | |||
| 11821 | |||
| 47667 | |||
| Rice (orthologs) | |||
| CNS Discovery Pipeline | |||
| Sorghum bicolor (with CNS) masked repeats 50x | |||
|} | |||
*<br> | |||
Revision as of 23:39, 14 December 2011
Most genomes within CoGe are annotated only with publicly available gene models however the Freeling Lab has also decorated a number of genomes with additional information. For reference the specific versions with extra annotation information are listed here.
Conserved Noncoding Sequence Data
| Species | Data set group ID | Data set ID | Comparison | Method | Full Name |
| Arabidopsis | 3 | 39598 | Arabidopsis (homeologs) | Manual Annotations and the CNS Discovery Pipeline | Arabidopsis thaliana Col-0 (thale cress) (with CNS) masked repeats 50 |
| Peach | 8400 | 42478 | Chocolate (orthologs) | CNS Discovery Pipeline | Prunus persica (peach) (with CNS) unmasked |
| Chocolate | 10997 | 46486 | Peach (orthologs) | CNS Discovery Pipeline | Theobroma cacao (chocolate) Belizian Criollo genotype (B97-61/B2) (with CNS) |
| Rice | 11822 | 47668 | Sorghum (orthologs) | CNS Discovery Pipeline | Oryza sativa japonica (Rice) (with CNS) masked repeats 50x |
| Sorghum | 11821 | 47667 | Rice (orthologs) | CNS Discovery Pipeline | Sorghum bicolor (with CNS) masked repeats 50x |