Carnivorous plants: Difference between revisions

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[[File:Screen shot 2012-02-01 at 2.48.16 PM.png|thumb|center|600px|GEvo analylsis of 2xUtricularia regions to 1xTomato regions. The Utricularia regions are syntenic to the same reigon of tomato and show extensive fractionation. Results may be regenerated at http://genomevolution.org/r/4gi8]]
[[File:Screen shot 2012-02-01 at 2.48.16 PM.png|thumb|center|600px|GEvo analylsis of 2xUtricularia regions to 1xTomato regions. The Utricularia regions are syntenic to the same reigon of tomato and show extensive fractionation. Results may be regenerated at http://genomevolution.org/r/4gi8]]
[[File:Screen Shot 2012-02-06 at 6.26.10 AM2.png|thumb|center|600px|GEvo analysis of [[pseudoassembly]] Utricularia to tomato. The pseudoassembly of Utricularia is based on the [[syntenic path assembly]] to tomato.  As such, duplicated utricularia genomic regions will appear next to each other.  If Utricularia has had an independent [[WGD]] followed by fractionation, these neighboring pieces will show [[intercalated synteny]] to tomato. Results may be regenerated at http://genomevolution.org/r/4h2c]]


==Differential fractionation of Utricularia and Genlisea (may be due to the polyploidy noted above)==
==Differential fractionation of Utricularia and Genlisea (may be due to the polyploidy noted above)==

Revision as of 13:34, 6 February 2012

Evidence that Utricularia has had a whole genome duplication following its divergence with tomato: fractionation of gene content in two distinct Utricularia genomic regions

GEvo analylsis of 2xUtricularia regions to 1xTomato regions. The Utricularia regions are syntenic to the same reigon of tomato and show extensive fractionation. Results may be regenerated at http://genomevolution.org/r/4gi8
GEvo analysis of pseudoassembly Utricularia to tomato. The pseudoassembly of Utricularia is based on the syntenic path assembly to tomato. As such, duplicated utricularia genomic regions will appear next to each other. If Utricularia has had an independent WGD followed by fractionation, these neighboring pieces will show intercalated synteny to tomato. Results may be regenerated at http://genomevolution.org/r/4h2c

Differential fractionation of Utricularia and Genlisea (may be due to the polyploidy noted above)

GEvo analysis of Genlisea and Utricularia to the orthologous outgroup region of Mimulus. Genlisea and Utricularia demostrate a pattern of differential fractionation. Results can be regenerated at: http://genomevolution.org/r/4gbw

Synteny between Genlisea and Utricularia

Syntenic dotplots

Utricularia Syntenic Dotplots

Phylogeny

polyploidy events

Evidence

Master

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