Difference between revisions of "Utricularia and Genlisea pseudoassembly"
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[[File:Screen shot 2012-02-06 at 9.55.40 AM.png|thumb|center|600px|Both Genlisea and Utricularia are pseudoassemblies against the tomato genome. Compared to syntenic tomato genomic regions. http://genomevolution.org/r/4h43]] | [[File:Screen shot 2012-02-06 at 9.55.40 AM.png|thumb|center|600px|Both Genlisea and Utricularia are pseudoassemblies against the tomato genome. Compared to syntenic tomato genomic regions. http://genomevolution.org/r/4h43]] | ||
| + | [[File:Screen shot 2012-02-06 at 3.07.02 PM.png|thumb|center|600px|Both Genlisea and Utricularia are pseudoassemblies against the tomato genome. Compared to syntenic tomato genomic regions. '''Note: All HSPs drawn on top''' http://genomevolution.org/r/4h6p]] | ||
==Sytnenic dotplots== | ==Sytnenic dotplots== | ||
[[File:Screen Shot 2012-02-06 at 6.26.10 AM.png|thumb|left|600px|SynMap analysis of pseudoassembly of Utricularia's contigs (based on synteny to tomato; y-axis) to tomato (x-axis). Results may be regenerated at http://genomevolution.org/r/4h1z]] | [[File:Screen Shot 2012-02-06 at 6.26.10 AM.png|thumb|left|600px|SynMap analysis of pseudoassembly of Utricularia's contigs (based on synteny to tomato; y-axis) to tomato (x-axis). Results may be regenerated at http://genomevolution.org/r/4h1z]] | ||
Revision as of 16:08, 6 February 2012
High resolution analyses
GEvo analysis of pseudoassembly Utricularia to tomato. The pseudoassembly of Utricularia is based on the syntenic path assembly to tomato. As such, duplicated utricularia genomic regions will appear next to each other. If Utricularia has had an independent WGD followed by fractionation, these neighboring pieces will show intercalated synteny to tomato. Results may be regenerated at http://genomevolution.org/r/4h2c
Both Genlisea and Utricularia are pseudoassemblies against the tomato genome. Compared to syntenic tomato genomic regions. http://genomevolution.org/r/4h43
Both Genlisea and Utricularia are pseudoassemblies against the tomato genome. Compared to syntenic tomato genomic regions. Note: All HSPs drawn on top http://genomevolution.org/r/4h6p
Sytnenic dotplots
SynMap analysis of pseudoassembly of Utricularia's contigs (based on synteny to tomato; y-axis) to tomato (x-axis). Results may be regenerated at http://genomevolution.org/r/4h1z
