Difference between revisions of "Documentation"

Revision as of 12:23, 10 August 2009

OrganismView Search and get an overview of an organism and its genomic information
CoGeBlast Blast against any number of organisms using CoGe's Blast interface (supports Blast, and BlastZ).
FeatView Search for genomic features by name or description
SynMap Generate syntenic dotplots of any two genomes
GEvo Compare multiple genomic regions using a variety of sequence comparison algorithms for high-resolution analysis to quickly identify patterns of genome evolution

FeatList CoGe's tool for managing list of genomic features
FastaView Generate Fasta sequences of multiple genomic features
SeqView Generate a Fasta sequence of a genomic region
GenomeView CoGe's interactive Genome Browser
CoGeAlign Generate multiple sequence alignments
GenomeMap Visually map genomic features to their genomic locations
tRNAView Search for tRNAs in genomes and genomic sequence
HSPView Viewing regions of sequence similarity as identified through a variety of tools in CoGe using a variety of sequence comparison algorithms
MatrixView View alignment scoring matrices.

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 *[[CoGeAlign]]  Generate multiple sequence alignments
 *[[GenomeMap]]  Visually map genomic features to their genomic locations
+*[[tRNAView]]  Search for tRNAs in genomes and genomic sequence
+*[[HSPView]]  Viewing regions of sequence similarity as identified through a variety of tools in CoGe using a variety of sequence comparison algorithms
+*[[MatrixView]]  View alignment scoring matrices.
 == Backend Documentation ==