Mimulus v. tomato: Difference between revisions
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| Solanum lycopersicum (tomato) | | Solanum lycopersicum (tomato) | ||
| [[File:Master 8156 12289.CDS-CDS.last.dag.all.go D20 g10 A5.aligncoords.qac1.1.40.gcoords ct0.w800.gene.s.ks.sr.cs1.csoS.min-.4.log.nsd.hist.png]] http://genomevolution.org/r/51uv | | [[File:Master 8156 12289.CDS-CDS.last.dag.all.go D20 g10 A5.aligncoords.qac1.1.40.gcoords ct0.w800.gene.s.ks.sr.cs1.csoS.min-.4.log.nsd.hist.png]] http://genomevolution.org/r/51uv | ||
| | | [[File:Master 8156 12289.CDS-CDS.last.dag.all.go D20 g10 A5.aligncoords.qac1.1.40.gcoords ct0.w800.gene.s.ks.sr.cs1.csoS.min-.4.max1.log.nsd.hist.png]] http://genomevolution.org/r/51uw | ||
| Ortholog screening [[1:1 Syntenic depth]] | | Ortholog screening [[1:1 Syntenic depth]] | ||
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| [[File:Master 12289 12289.CDS-CDS.lastz.dag.all.go D20 g10 A5.aligncoords.gcoords ct0.w1000.gene.ks.sr.cs1.csoN.min-.3.max1.log.nsd.hist.png]] http://genomevolution.org/r/4tpr | | [[File:Master 12289 12289.CDS-CDS.lastz.dag.all.go D20 g10 A5.aligncoords.gcoords ct0.w1000.gene.ks.sr.cs1.csoN.min-.3.max1.log.nsd.hist.png]] http://genomevolution.org/r/4tpr | ||
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| Mimulus guttatus | |||
| Solanum lycopersicum (tomato) | |||
| [[File:Master 8156 12289.CDS-CDS.last.dag.all.go D20 g10 A5.aligncoords.qac1.1.40.gcoords ct0.w800.gene.s.ks.sr.cs1.csoS.min-.4.log.nsd.hist.png]] http://genomevolution.org/r/51uv | |||
| [[File:Master 8156 12289.CDS-CDS.last.dag.all.go D20 g10 A5.aligncoords.qac1.1.40.gcoords ct0.w800.gene.s.ks.sr.cs1.csoS.min-.4.max1.log.nsd.hist.png]] http://genomevolution.org/r/51uw | |||
| Ortholog screening [[1:1 Syntenic depth]] | |||
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Revision as of 14:45, 7 July 2012
Note: evaluation of tomato is difficult as its polyploidy is not a string tetraploidy or hexaploidy: Tomato genome
Whole genome syntenic dotplots
High-resolution analysis of syntenic regions with GEvo
Fractionation appears to be independent among intragenomic syntenic regions
Ks histograms of syntenic gene pairs
| Org 1 | Org 2 | Full Hist | Banded Hist | Notes |
|---|---|---|---|---|
| Mimulus guttatus | Solanum lycopersicum (tomato) |  http://genomevolution.org/r/51li
|
 http://genomevolution.org/r/51up
|
|
| Mimulus guttatus | Solanum lycopersicum (tomato) |  http://genomevolution.org/r/51uv
|
 http://genomevolution.org/r/51uw
|
Ortholog screening 1:1 Syntenic depth |
| Solanum lycopersicum (tomato) | Solanum lycopersicum (tomato) |  http://genomevolution.org/r/51uq
|
 http://genomevolution.org/r/4tpr
|
|
| Mimulus guttatus | Solanum lycopersicum (tomato) | http://genomevolution.org/r/51uv
|
http://genomevolution.org/r/51uw
|
Ortholog screening 1:1 Syntenic depth |