Difference between revisions of "FastaView"

Revision as of 12:53, 26 August 2009

FastaView is CoGe's application for generating fasta formatted sequences from a list of genomic features. FastaView easily allows you to generate DNA sequence and protein sequence translations. If a sequence has only one reading frame (as determined by a starting methionine and no in-sequence stop codons), only that protein sequence will be shown. Otherwise FastaAlign will generate protein sequence (with stops) for all 6 reading frames. Sequences in FastaView can be easily copied from the text-box displaying the sequences by doubling clicking in the text-box. This will automatically select all the sequences in the text-box which can then be copied and pasted into another application. Alternatively, you can click on the "Plain Text" button and the sequences will be sent to a web-page only containing the sequences. This page can be saved for later used.

Note:

FastaView is an intermediate application in CoGe that is usually accessed through another program, such as FeatList.

Example Link

You can view an example FastaView page at: http://synteny.cnr.berkeley.edu/CoGe/FastaView.pl?fid=40797368_1&fid=40797370_1&fid=40797372_1&fid=40797374_1&fid=40797379_1&fid=40797658_1&fid=40797803_1&fid=40798601_1&fid=40798609_1&fid=40799191_1&fid=40800071_1&fid=40800073_1&fid=40800416_1&fid=40800528_1&fid=40801211_1&fid=40801529_1&fid=40801678_1&fid=40801680_1&fid=40801682_1&fid=40801747_1&fid=40801750_1&fid=40801752_1&fid=40801754_1&fid=40801756_1&fid=40801765_1&fid=40802357_1&fid=40802368_1&fid=40802370_1&fid=40802372_1&fid=40802374_1&fid=40802376_1&fid=40802517_1&fid=40802519_1&fid=40802521_1&fid=40803178_1&fid=40803180_1&fid=40804365_1&fid=40804372_1&fid=40804584_1&fid=40805292_1&fid=40805375_1;gstid=1