Difference between revisions of "Processing RNA seq data"
From CoGepedia
(Created page with 'CoGe's RNA-seq processing pipeline is highly automated version of the qTeller RNA-seq processing pipeline. For detailed instructions on how to use these same tools manually [ht...') |
|||
| Line 2: | Line 2: | ||
For detailed instructions on how to use these same tools manually [http://qteller.com/RNAseq-analysis-recipe.pdf see this PDF]. Automated python scripts for batch processing large numbers of datasets are available [https://github.com/jschnable/qTeller/tree/master/rna_process here]. | For detailed instructions on how to use these same tools manually [http://qteller.com/RNAseq-analysis-recipe.pdf see this PDF]. Automated python scripts for batch processing large numbers of datasets are available [https://github.com/jschnable/qTeller/tree/master/rna_process here]. | ||
| + | |||
| + | **Quality Trimming** | ||
| + | |||
| + | **Alignment** | ||
| + | |||
| + | **Format Conversion and Sorting** | ||
| + | |||
| + | **Expression Quantification** | ||
Revision as of 11:48, 12 February 2014
CoGe's RNA-seq processing pipeline is highly automated version of the qTeller RNA-seq processing pipeline.
For detailed instructions on how to use these same tools manually see this PDF. Automated python scripts for batch processing large numbers of datasets are available here.
- Quality Trimming**
- Alignment**
- Format Conversion and Sorting**
- Expression Quantification**
