Processing RNA seq data: Difference between revisions
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Created page with 'CoGe's RNA-seq processing pipeline is highly automated version of the qTeller RNA-seq processing pipeline. For detailed instructions on how to use these same tools manually [ht...' |
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For detailed instructions on how to use these same tools manually [http://qteller.com/RNAseq-analysis-recipe.pdf see this PDF]. Automated python scripts for batch processing large numbers of datasets are available [https://github.com/jschnable/qTeller/tree/master/rna_process here]. | For detailed instructions on how to use these same tools manually [http://qteller.com/RNAseq-analysis-recipe.pdf see this PDF]. Automated python scripts for batch processing large numbers of datasets are available [https://github.com/jschnable/qTeller/tree/master/rna_process here]. | ||
**Quality Trimming** | |||
**Alignment** | |||
**Format Conversion and Sorting** | |||
**Expression Quantification** | |||
Revision as of 17:48, 12 February 2014
CoGe's RNA-seq processing pipeline is highly automated version of the qTeller RNA-seq processing pipeline.
For detailed instructions on how to use these same tools manually see this PDF. Automated python scripts for batch processing large numbers of datasets are available here.
- Quality Trimming**
- Alignment**
- Format Conversion and Sorting**
- Expression Quantification**