2014 JCVI Summer Genomics Workshop: Difference between revisions
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===CoGe=== | ===CoGe=== | ||
* '''Keynote:''' http://de.iplantcollaborative.org/dl/d/51782D3C-3BCE-413D-BB30-6F2AB90CB1D7/2014_JCVI_CoGe.key | * '''Keynote:''' http://de.iplantcollaborative.org/dl/d/51782D3C-3BCE-413D-BB30-6F2AB90CB1D7/2014_JCVI_CoGe.key | ||
====Loading your own genome==== | |||
* E. coli genome: http://de.iplantcollaborative.org/dl/d/555B53F9-E738-4951-85A3-421E23804DFA/genome_7112.faa | |||
* E. coli annotations: http://de.iplantcollaborative.org/dl/d/C1ACC5C3-1E0B-409B-8A91-C969943F41F8/7122-structural-annotations.gff | |||
* E. coli expression data: http://de.iplantcollaborative.org/dl/d/F1EE1A86-F91A-46E7-92D6-A25EE78E3DA3/7112-lo.csv | |||
* E. coli variant data: http://de.iplantcollaborative.org/dl/d/B4040AC9-74A7-4E3E-B074-F23E1D70823E/7112-demo.vcf.gz | |||
* E. coli bam alignment data: http://de.iplantcollaborative.org/dl/d/D0FC54E4-6DA6-4604-BE19-81F1D33B5350/7112-alignment.bam | |||
==Links== | ==Links== | ||
Revision as of 11:37, 19 June 2014
Talks
iPlant Data Store
- Keynote: http://de.iplantcollaborative.org/dl/d/32FB6BEE-D20B-42E7-BB3A-318BD55916C5/2014_JCVI_iPlant_Data_Store.key
- PDF: http://de.iplantcollaborative.org/dl/d/62D4D8BF-2233-4682-8FFD-A016590550F0/2014_JCVI_iPlant_Data_Store.key.pdf
CoGe
- Keynote: http://de.iplantcollaborative.org/dl/d/51782D3C-3BCE-413D-BB30-6F2AB90CB1D7/2014_JCVI_CoGe.key
Loading your own genome
- E. coli genome: http://de.iplantcollaborative.org/dl/d/555B53F9-E738-4951-85A3-421E23804DFA/genome_7112.faa
- E. coli annotations: http://de.iplantcollaborative.org/dl/d/C1ACC5C3-1E0B-409B-8A91-C969943F41F8/7122-structural-annotations.gff
- E. coli expression data: http://de.iplantcollaborative.org/dl/d/F1EE1A86-F91A-46E7-92D6-A25EE78E3DA3/7112-lo.csv
- E. coli variant data: http://de.iplantcollaborative.org/dl/d/B4040AC9-74A7-4E3E-B074-F23E1D70823E/7112-demo.vcf.gz
- E. coli bam alignment data: http://de.iplantcollaborative.org/dl/d/D0FC54E4-6DA6-4604-BE19-81F1D33B5350/7112-alignment.bam
Links
- iPlant Learning Center: http://www.iplantcollaborative.org/learning-center
- iPlant Data Store Quick Start: https://pods.iplantcollaborative.org/wiki/display/start/Data+Store+Quick+Start
- iPlant: Using i-commands (command line access to the Data Store): https://pods.iplantcollaborative.org/wiki/display/start/Using+icommands
- Loading private data in CoGe: http://www.youtube.com/watch?v=JPZ8IrPnh_8
- RNASeq with EPIC-CoGe: https://www.youtube.com/watch?v=3fNyHGB02dM