Glossary: Difference between revisions
Jump to navigation
Jump to search
No edit summary |
|||
| Line 1: | Line 1: | ||
A list of terms used in various pages in this wiki that may need clarification. | A list of terms used in various pages in this wiki that may need clarification. | ||
==Genomic Evolution Terminology == | == Genomic Evolution Terminology == | ||
* [[Genomic Feature]] | |||
* [[Contig]] | *[[Genomic Feature]] | ||
* [[Conserved Non-Coding Sequence]] ([[CNS]]) | *[[Contig]] | ||
* [[High-scoring segment pair]] ([[HSP]]) | *[[Conserved Non-Coding Sequence]] ([[CNS]]) | ||
* [[Synteny]] | *[[High-scoring segment pair]] ([[HSP]]) | ||
* [[Whole Genome Duplication]] | *[[Synteny]] | ||
* [[Homolog]] | *[[Whole Genome Duplication]] | ||
* [[Homeolog]] | *[[Homolog]] | ||
* [[Ortholog]] | *[[Homeolog]] | ||
* [[Perfect Ortholog]] | *[[Ortholog]] | ||
* [[Paralog]] | *[[Perfect Ortholog]] | ||
* [[Out-Paralog]] | *[[Paralog]] | ||
* [[In-Paralog]] | *[[Out-Paralog]] | ||
* [[Syntelog]] | *[[In-Paralog]] | ||
* [[Inversion]] | *[[Syntelog]] | ||
* [[Local Gene Duplication]] | *[[Inversion]] | ||
* [[Tandem Gene Duplication]] | *[[Local Gene Duplication]] | ||
* [[Deletion]] | *[[Tandem Gene Duplication]] | ||
* [[Transposition]] | *[[Deletion]] | ||
* [[Insertion]] | *[[Transposition]] | ||
* [[Diploidization]] | *[[Insertion]] | ||
* [[Fractionation]] | *[[Diploidization]] | ||
* [[Chromosome Rearrangement]] | *[[Fractionation]] | ||
* [[Synonymous/Nonsynonymous Mutations (Ks/Kn)]] | *[[Chromosome Rearrangement]] | ||
* [[Genespace]] | *[[Synonymous/Nonsynonymous Mutations (Ks/Kn)]] | ||
* [[Subfunctionalization]] | *[[Genespace]] | ||
* [[Neofunctionalization]] | *[[Subfunctionalization]] | ||
* [[ | *[[Neofunctionalization]] | ||
*[[Dotplot]] | |||
*DNA alignment | |||
*Protein alignment | |||
==Methodology== | ==Methodology== | ||
Revision as of 23:30, 16 September 2009
A list of terms used in various pages in this wiki that may need clarification.
Genomic Evolution Terminology
- Genomic Feature
- Contig
- Conserved Non-Coding Sequence (CNS)
- High-scoring segment pair (HSP)
- Synteny
- Whole Genome Duplication
- Homolog
- Homeolog
- Ortholog
- Perfect Ortholog
- Paralog
- Out-Paralog
- In-Paralog
- Syntelog
- Inversion
- Local Gene Duplication
- Tandem Gene Duplication
- Deletion
- Transposition
- Insertion
- Diploidization
- Fractionation
- Chromosome Rearrangement
- Synonymous/Nonsynonymous Mutations (Ks/Kn)
- Genespace
- Subfunctionalization
- Neofunctionalization
- Dotplot
- DNA alignment
- Protein alignment
Methodology
- Flanking Gene Method for detecting gene loss and transposition events
- Collinear Gene Order for detecting syntenic regions
- Useful divergence for comparing genomic regions