Medically Relevant Genomes in CoGe

List of Medical Model Genomes

Phylum	Class	Species	CoGe Genome Link	Related Genomes Available	Research Interest Examples
Chordata (Vertebrates)
	Mammals	Human	Homo sapiens v 38 (NCBI)	Homo subspecies	Disease modeling, ecology, genetic variation
		Mouse	Mus musculus C57BL/6J v GRCm28.p3 (NCBI)	Mus subspecies	Disease modeling, gene function
		Rat	Rattus norvegicus v 6.0 (Ensembl)	Rattus species	Disease modeling, gene function
		Rabbit	Oryctolagus cuniculus v 2.0 (Ensembl)	Rabbit versions	Pharmaceutical testing, immune response
		Guinea pig	Cavia porcellus inbred line 2N v 3.0 (Ensembl)	Guinea pig versions	Human disease, human immune response, toxicology
		Pig	Sus scrofa v 10.2 (Ensembl)	Sus scrofa versions
	Birds	Chicken	Gallus gallus v 4.74 (Ensembl)	Gallus versions	Agriculture, developmental biology
		Zebra Finch	Taeniopygia guttata v 3.2.4 (BGI/Ensembl)	Taeniopygia versions	Learning, neural biology
		Japanese Quail	Coturnix japonica v 1.0 (NCBI)		Agriculture, developmental biology
	Amphibians & Reptiles	Western Clawed Frog (Xenopus)	Xenopus tropicalis v 4.2.64 (Ensembl)	Xenopus species	Vertebrate developmental biology
	Fish	Zebrafish	Danio rerio (NCBI)	Danio versions	Vertebrate developmental biology
		Medaka	Oryzias latipes v 1.0 (NCBI)	Oryzias versions	Vertebrate developmental biology
		Cichlids	Maylandia zebra v 1.1 (NCBI)	Cichlid species	Craniofacial development disorders
		Mexican tetra (cave fish)	Astyanax mexicanus v 1.0.2 (NCBI)	Astyanax versions	Eye development and degeneration
		Turquoise killifish	Nothobranchius furzeri GRZ v 1.0 (NCBI)	Nothobranchius species	Aging model species
Ecdysozoa
	Insects	Fruit fly	Fruit fly v 6.0 (NCBI)	Drosophila species	Gene function
	Platyhelmenthes		[1]	[2]	Vertebrate developmental biology
	Nematodes		(Ensembl)	[3]	Vertebrate developmental biology

Links

Notebook containing all medically relevant genomes in CoGe