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Here you can find tutorials informing you how to get the most out of CoGe's tools. | Here you can find tutorials informing you how to get the most out of CoGe's tools. | ||
(Please note that this wiki is new, and we are working on adding information as quickly as we can.) | (Please note that this wiki is new, and we are working on adding information as quickly as we can.) | ||
=Original tutorials= | ==Original tutorials== | ||
You can find a list of CoGe's old tutorials [http://synteny.cnr.berkeley.edu/CoGe/docs/help/Tutorials/Tutorials.html here]. | You can find a list of CoGe's old tutorials [http://synteny.cnr.berkeley.edu/CoGe/docs/help/Tutorials/Tutorials.html here]. | ||
=Text= | ==Text== | ||
= | ===What to do with a genome in the early stages of assembly?=== | ||
*[[K12 assembly | Bacterial example]] | |||
*[[Potato version 1 | Plant example]] | |||
==OrganismView== | |||
==Videos== | |||
===OrganismView=== | |||
OrganismView is CoGe's tool for finding genomes for your organism of interest. | OrganismView is CoGe's tool for finding genomes for your organism of interest. | ||
<youtube>obCu1bCFQdk</youtube> | <youtube>obCu1bCFQdk</youtube> | ||
==GenomeView== | ===GenomeView=== | ||
GenomeView is CoGe's interactive genome browser for visualizing genomes, identifying regions of interest, and extracting underlying DNA sequence and genomic features (e.g. genes) | GenomeView is CoGe's interactive genome browser for visualizing genomes, identifying regions of interest, and extracting underlying DNA sequence and genomic features (e.g. genes) | ||
<youtube>tch9srrmztg</youtube> | <youtube>tch9srrmztg</youtube> | ||
==FeatList== | ===FeatList=== | ||
FeatList is CoGe's tool for managing lists of genomic features. | FeatList is CoGe's tool for managing lists of genomic features. | ||
<youtube>-KaloyRbWkE</youtube> | <youtube>-KaloyRbWkE</youtube> | ||
==SeqView== | ===SeqView=== | ||
SeqView is CoGe's tool for generating primary sequence data in fasta format. | SeqView is CoGe's tool for generating primary sequence data in fasta format. | ||
<youtube>GqdRmTNUw9U</youtube> | <youtube>GqdRmTNUw9U</youtube> | ||
Revision as of 01:12, 15 October 2009
Here you can find tutorials informing you how to get the most out of CoGe's tools. (Please note that this wiki is new, and we are working on adding information as quickly as we can.)
Original tutorials
You can find a list of CoGe's old tutorials here.
Text
What to do with a genome in the early stages of assembly?
Videos
OrganismView
OrganismView is CoGe's tool for finding genomes for your organism of interest.
GenomeView
GenomeView is CoGe's interactive genome browser for visualizing genomes, identifying regions of interest, and extracting underlying DNA sequence and genomic features (e.g. genes)
FeatList
FeatList is CoGe's tool for managing lists of genomic features.
SeqView
SeqView is CoGe's tool for generating primary sequence data in fasta format.