ChIP-seq Analysis Pipeline: Difference between revisions
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CoGe can analyze [https://en.wikipedia.org/wiki/ChIP-sequencing chromatin immunoprecipitation sequence (ChIP-seq)] using the software package [http://homer.salk.edu/homer/ Homer]. | CoGe can analyze [https://en.wikipedia.org/wiki/ChIP-sequencing chromatin immunoprecipitation sequence (ChIP-seq)] using the software package [http://homer.salk.edu/homer/ Homer]. | ||
See the [[LoadExperiment]] tool to use the new pipeline | See the [[LoadExperiment]] tool to use the new pipeline. | ||
This analysis pipeline was developed by Xiang Ju (in the lab of [https://www.bio.upenn.edu/people/brian-gregory Brian Gregory at UPenn]). | This analysis pipeline was developed by Xiang Ju (in the lab of [https://www.bio.upenn.edu/people/brian-gregory Brian Gregory at UPenn]). | ||
==Inputs== | |||
Select FASTQ input files to make the pipeline available in the menu. | |||
==Workflow== | |||
==Outputs== | |||
Revision as of 19:49, 3 March 2016
CoGe can analyze chromatin immunoprecipitation sequence (ChIP-seq) using the software package Homer.
See the LoadExperiment tool to use the new pipeline.
This analysis pipeline was developed by Xiang Ju (in the lab of Brian Gregory at UPenn).
Inputs
Select FASTQ input files to make the pipeline available in the menu.