Difference between revisions of "Syntenic gene sets"
From CoGepedia
(→Finding and Comparing Syntenic Regions among Arabidopsis and the Outgroups Papaya, Poplar, and Grape: CoGe with Rosids Plant Physiol. Lyons et al. 148: 1772) |
|||
| Line 1: | Line 1: | ||
This page is dedicated for providing lists and menus of syntenic regions between various genomes. These lists are usually from publications in MS Excel format and provide links to populate the sequence submission form in GEvo. This will allow you to quickly start comparing syntenic regions of interest. | This page is dedicated for providing lists and menus of syntenic regions between various genomes. These lists are usually from publications in MS Excel format and provide links to populate the sequence submission form in GEvo. This will allow you to quickly start comparing syntenic regions of interest. | ||
| − | ==From: [http://www.plantphysiol.org/cgi/content/abstract/148/4/1772 Finding and Comparing Syntenic Regions among Arabidopsis and the Outgroups Papaya, Poplar, and Grape: CoGe with Rosids. | + | ==From: [http://www.plantphysiol.org/cgi/content/abstract/148/4/1772 Finding and Comparing Syntenic Regions among Arabidopsis and the Outgroups Papaya, Poplar, and Grape: CoGe with Rosids.] Plant Physiol. 148: 1772 Lyons et al. == |
| − | Plant Physiol. 148: 1772 | + | |
| − | Lyons et al. | + | |
[http://synteny.cnr.berkeley.edu/CoGe/data/distrib/SI2_At-Cp4.xls Arabidopsis thaliana - Carica papaya]: At has had two tetraploidies while Cp has had none. (Prepared by the Paterson lab at the Plant Center at the University of Georgia and modified by the Freeling lab to include GEvo links.) | [http://synteny.cnr.berkeley.edu/CoGe/data/distrib/SI2_At-Cp4.xls Arabidopsis thaliana - Carica papaya]: At has had two tetraploidies while Cp has had none. (Prepared by the Paterson lab at the Plant Center at the University of Georgia and modified by the Freeling lab to include GEvo links.) | ||
[http://synteny.cnr.berkeley.edu/CoGe/data/distrib/SI1_At-Cp-Vv-2Pt_GEvo_links.xls Arabidopsis thaliana - Carica papaya - Vitis vinifera - Populus trichocarpa(2x)]: This list contains both syntenic regions for poplar from its most recent genome duplication event, but only a single for Arabidopsis. | [http://synteny.cnr.berkeley.edu/CoGe/data/distrib/SI1_At-Cp-Vv-2Pt_GEvo_links.xls Arabidopsis thaliana - Carica papaya - Vitis vinifera - Populus trichocarpa(2x)]: This list contains both syntenic regions for poplar from its most recent genome duplication event, but only a single for Arabidopsis. | ||
Revision as of 13:16, 30 November 2009
This page is dedicated for providing lists and menus of syntenic regions between various genomes. These lists are usually from publications in MS Excel format and provide links to populate the sequence submission form in GEvo. This will allow you to quickly start comparing syntenic regions of interest.
From: Finding and Comparing Syntenic Regions among Arabidopsis and the Outgroups Papaya, Poplar, and Grape: CoGe with Rosids. Plant Physiol. 148: 1772 Lyons et al.
Arabidopsis thaliana - Carica papaya: At has had two tetraploidies while Cp has had none. (Prepared by the Paterson lab at the Plant Center at the University of Georgia and modified by the Freeling lab to include GEvo links.)
Arabidopsis thaliana - Carica papaya - Vitis vinifera - Populus trichocarpa(2x): This list contains both syntenic regions for poplar from its most recent genome duplication event, but only a single for Arabidopsis.
