Difference between revisions of "FeatView"
From CoGepedia
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[[Image:FeatView home.png|thumb|right|600px|FeatView's homepage.]] | [[Image:FeatView home.png|thumb|right|600px|FeatView's homepage.]] | ||
| − | FeatView is CoGe's tool for finding genomic features by name or description. <font color=red>WARNING:</font> It is often difficult to find a [[genomic feature]] by name. The main reason for this is the variety of names used for any given [[genomic feature]]. While CoGe can store multiple names for a given [[genomic feature]], only the names supplied in the original data file ([[dataset]]) are used. If you are having difficulty finding a genomic feature by name, try to find the sequence for the feature and use [[CoGeBlast]] to search that sequence against the genome to which it belongs. | + | FeatView is CoGe's tool for finding genomic features by name or description. |
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| + | <font color=red>'''WARNING:'''</font> '''It is often difficult to find a [[genomic feature]] by name.''' The main reason for this is the variety of names used for any given [[genomic feature]]. While CoGe can store multiple names for a given [[genomic feature]], only the names supplied in the original data file ([[dataset]]) are used. If you are having difficulty finding a genomic feature by name, try to find the sequence for the feature and use [[CoGeBlast]] to search that sequence against the genome to which it belongs. | ||
==Quick Start== | ==Quick Start== | ||
Revision as of 00:08, 2 January 2010
FeatView is CoGe's tool for finding genomic features by name or description.
WARNING: It is often difficult to find a genomic feature by name. The main reason for this is the variety of names used for any given genomic feature. While CoGe can store multiple names for a given genomic feature, only the names supplied in the original data file (dataset) are used. If you are having difficulty finding a genomic feature by name, try to find the sequence for the feature and use CoGeBlast to search that sequence against the genome to which it belongs.
Contents
Quick Start
To use, just:
- Type in the name of the genomic feature in the "Name:" text box.
- Click on the "Search" button.
- Select the appropriate feature type.
- Select the appropriate genome for the feature.
- The annotation for the feature appears at the bottom of the screen.
FeatView's results after searching for genomic features with the name "At1g01010". The Arabidopsis thaliana genome from TAIR version 9 is selected and the feature type "CDS" is selected.
Searching
WARNING:There are several options when searching for a genomic feature. The easiest and fastest is if you know the full name of the feature.
