Difference between revisions of "GenomeView examples"
From CoGepedia
Line 19: | Line 19: | ||
===Masked regions=== | ===Masked regions=== | ||
− | [[Image:GenomeView-masked.png|thumb|800px|Genomic region with masked sequence colored purple]] | + | [[Image:GenomeView-masked.png|thumb|800px|center|Genomic region with masked sequence colored purple]] |
− | [[Image:GenomeView-rRNA.png|thumb|800px|Microbial (archaea) genomic region with 23S and 16S rRNA genes drawn as wide gray arrows]] | + | |
− | [[Image:GenomeView-pseudogene-2.png|thumb|800px|Microbial (archaea) genomic region with many pseudogenes drawn as orange-red arrows]] | + | ===rRNA genes=== |
− | [[Image:GenomeView-wobbleGC1.png|thumb|800px|Wobble GC content colored for Chlamydomonas reinhardtii genome. Green means high GC content in codon wobble positions]] | + | [[Image:GenomeView-rRNA.png|thumb|800px|center|Microbial (archaea) genomic region with 23S and 16S rRNA genes drawn as wide gray arrows]] |
− | [[Image:GenomeView-wobbleGC2.png|thumb|800px|Wobble GC content colored for Chlamydomonas reinhardtii chloroplast genome. Red means low GC content in codon wobble positions]] | + | |
− | [[Image:GenomeView-wobbleGC3.png|thumb|800px|Wobble GC content colored for Chlamydomonas reinhardtii mitochondria genome. Yellow means ~50% GC content in codon wobble positions]] | + | ===Pseudogenes=== |
+ | [[Image:GenomeView-pseudogene-2.png|thumb|800px|center|Microbial (archaea) genomic region with many pseudogenes drawn as orange-red arrows]] | ||
+ | |||
+ | ===GC content filter=== | ||
+ | [[Image:GenomeView-wobbleGC1.png|thumb|800px|center|Wobble GC content colored for Chlamydomonas reinhardtii genome. Green means high GC content in codon wobble positions]] | ||
+ | [[Image:GenomeView-wobbleGC2.png|thumb|800px|center|Wobble GC content colored for Chlamydomonas reinhardtii chloroplast genome. Red means low GC content in codon wobble positions]] | ||
+ | [[Image:GenomeView-wobbleGC3.png|thumb|800px|center|Wobble GC content colored for Chlamydomonas reinhardtii mitochondria genome. Yellow means ~50% GC content in codon wobble positions]] |