Plasmodia comparative genomics: Difference between revisions

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[[Image:Master_7949_2465.CDS-CDS.blastn.dag.go_c4_D20_g10_A5.aligncoords.gcoords_ct0.w1200.png|thumb|right|600px|Syntenic dotplot of Plasmodium falciparum (x-axis) and Plasmodium knowlesi (y-axis).  Results can be regenerated at: http://synteny.cnr.berkeley.edu/CoGe/SynMap.pl?dsgid1=7949;dsgid2=2465;c=4;D=20;g=10;A=5;Dm=0;gm=0;w=0;b=1;ft1=1;ft2=1;do1=1;do2=1;do=40;dt=geneorder]]
[[Image:Plasmodium falciparum cds gc content histogram.png|thumb|right|600px|Histogram of CDS GC content for Plasmodium falciparum.  Generated by [[OrganismView]] ]]
[[Image:Plasmodium falciparum cds gc content histogram.png|thumb|right|600px|Histogram of CDS GC content for Plasmodium falciparum.  Generated by [[OrganismView]] ]]


Revision as of 18:37, 29 March 2010

Syntenic dotplot of Plasmodium falciparum (x-axis) and Plasmodium knowlesi (y-axis). Results can be regenerated at: http://synteny.cnr.berkeley.edu/CoGe/SynMap.pl?dsgid1=7949;dsgid2=2465;c=4;D=20;g=10;A=5;Dm=0;gm=0;w=0;b=1;ft1=1;ft2=1;do1=1;do2=1;do=40;dt=geneorder
Histogram of CDS GC content for Plasmodium falciparum. Generated by OrganismView
Histogram of CDS GC content for Plasmodium knowlesi. Generated by OrganismView
Log-odds score substitution matrix of codons between Plasmodium falciparum (x-axis) and Plasmodium knowlesi (y-axis). P. falciparum is a low-GC genome and P. kowlesi is a mid-GC genome.
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