Aspergillus oryzae and flavus: Difference between revisions

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[[Image:Dotplot Aspergillus-oryzae versus flavus.png|thumb|600px|right|Syntenic dotplot between two species/strains of Aspergillus:  flavus (x-axis) and oryzae (y-axis).  Black arrows point to syntenic discontinuities where there has been a discernible insertion or deletion in one genome.  Red dashed lines highlight a pair of chromosomes that have possibly exchanged arms.  While it is not possible to assign the event to either organism from this plot, it also could be the result of a genome assembly error.  This analysis can be regenerated at: http://genomevolution.org/CoGe/SynMap.pl?dsgid1=8171;dsgid2=7146;c=4;D=20;g=10;A=5;Dm=;gm=;w=0;b=1;ft1=1;ft2=1;do1=1;do2=1;do=40;dt=geneorder .]]
[[Image:Dotplot Aspergillus-oryzae versus flavus.png|thumb|600px|right|Syntenic dotplot between two species/strains of Aspergillus:  flavus (x-axis) and oryzae (y-axis).  Black arrows point to syntenic discontinuities where there has been a discernible insertion or deletion in one genome.  Red dashed lines highlight a pair of chromosomes that have possibly exchanged arms.  While it is not possible to assign the event to either organism from this plot, it also could be the result of a genome assembly error.  This analysis can be regenerated at: http://genomevolution.org/CoGe/SynMap.pl?dsgid1=8171;dsgid2=7146;c=4;D=20;g=10;A=5;Dm=;gm=;w=0;b=1;ft1=1;ft2=1;do1=1;do2=1;do=40;dt=geneorder .]]
[[Image:42188 42187 42186 42185 42184 42183 42182 42181 42180 42179 42178 42177 42176 42175 42174 42173 42172 42171 42170 42169 42168 42167 42166 42165 42164 42163 42162 min CDS gc.png|thumb|600px|right|Aspergillus oryzae strain RIB 40 protein coding sequence GC content histogram. Counts are per sequences and binned according to their GC content. http://synteny.cnr.berkeley.edu/CoGe/OrganismView.pl?dsgid=8171]]


Overview of genomes:
Overview of genomes:
*Aspergillus oryzae strain RIB 40: http://genomevolution.org/CoGe/OrganismView.pl?dsgid=8171
*Aspergillus oryzae strain RIB 40: http://genomevolution.org/CoGe/OrganismView.pl?dsgid=8171
*Aspergillus flavus strain NRRL3357: http://synteny.cnr.berkeley.edu/CoGe/OrganismView.pl?dsgid=7146
*Aspergillus flavus strain NRRL3357: http://synteny.cnr.berkeley.edu/CoGe/OrganismView.pl?dsgid=7146

Revision as of 04:02, 13 April 2010

Syntenic dotplot between two species/strains of Aspergillus: flavus (x-axis) and oryzae (y-axis). Black arrows point to syntenic discontinuities where there has been a discernible insertion or deletion in one genome. Red dashed lines highlight a pair of chromosomes that have possibly exchanged arms. While it is not possible to assign the event to either organism from this plot, it also could be the result of a genome assembly error. This analysis can be regenerated at: http://genomevolution.org/CoGe/SynMap.pl?dsgid1=8171;dsgid2=7146;c=4;D=20;g=10;A=5;Dm=;gm=;w=0;b=1;ft1=1;ft2=1;do1=1;do2=1;do=40;dt=geneorder .
Aspergillus oryzae strain RIB 40 protein coding sequence GC content histogram. Counts are per sequences and binned according to their GC content. http://synteny.cnr.berkeley.edu/CoGe/OrganismView.pl?dsgid=8171

Overview of genomes:

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