Potato versus grape: Difference between revisions

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-[[image:Master 9092 43.genomic-CDS.blastn.dag.go c4 D100 g50 A5.aligncoords.gcoords ct0.w2000.png|thumb|600px|right|Syntenic comparison between grape (y-axis) and potato (x-axis). http://genomevolution.org/CoGe/SynMap.pl?dsgid1=43;dsgid2=9092;c=4;D=100;g=50;A=5;Dm=;gm=;w=0;b=1;ft1=1;ft2=2;do1=1;do2=1;do=40;dt=geneorder]]
+[[image:Master 9092 43.genomic-CDS.blastn.dag.go c4 D100 g50 A5.aligncoords.gcoords ct0.w2000.png|thumb|600px|right|Syntenic comparison between grape (y-axis) and potato (x-axis). Potato's genome is assembled into ~68,000 contigs and are ordered from largest to smallest (left to right).  Regions with synteny are identifiable based on green dots, but overall the image is difficult to interpret.  Results can be regenerated at: http://genomevolution.org/CoGe/SynMap.pl?dsgid1=43;dsgid2=9092;c=4;D=100;g=50;A=5;Dm=;gm=;w=0;b=1;ft1=1;ft2=2;do1=1;do2=1;do=40;dt=geneorder]]
+[[Image:Specifying-syntenic-path-assembly.png|thumb|600px|right|Specifying the syntenic path assembly option in [[SynMap]] ]]
 [[image:Master 9092 43.genomic-CDS.blastn.dag.go c4 D100 g50 A5.aligncoords.gcoords ct0.w2000.ass2.png|thumb|600px|right|Syntenic comparison between grape (y-axis) and potato (x-axis) using syntenic path assembly in SynMap. http://genomevolution.org/CoGe/SynMap.pl?dsgid1=43;dsgid2=9092;c=4;D=100;g=50;A=5;Dm=;gm=;w=0;b=1;ft1=1;ft2=2;sp=2;do1=1;do2=1;do=40;dt=geneorder]]

Revision as of 20:55, 29 April 2010