Maize v1 v2: Difference between revisions
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[[Image:8082 9106.CDS-genomic.blastn.dag.go c4 D20 g10 A5.aligncoords.gcoords.3-3.w800.ct inv.png|thumb|600px|right|Syntenic dotplot of maize B73 chromosome 3 between refgen version 1 and version 2. Syntenic gene-pairs (dots) are colored green and blue if in the same or opposite orientation respectively. Note the large inversion near the middle (blue line) and many smaller inversion (blue dots). Results can be regenerated by visiting the master dotplot (http://genomevolution.org/r/4dq) and clicking on the chromosome 3 versus chromosome 3 comparison.]] | [[Image:8082 9106.CDS-genomic.blastn.dag.go c4 D20 g10 A5.aligncoords.gcoords.3-3.w800.ct inv.png|thumb|600px|right|Syntenic dotplot of maize B73 chromosome 3 between refgen version 1 and version 2. Syntenic gene-pairs (dots) are colored green and blue if in the same or opposite orientation respectively. Note the large inversion near the middle (blue line) and many smaller inversion (blue dots). Results can be regenerated by visiting the master dotplot (http://genomevolution.org/r/4dq) and clicking on the chromosome 3 versus chromosome 3 comparison.]] | ||
[[Image:GEvo analysis of maize B73 refgen v1 v2.png|thumb|600px|right|GEvo analysis of 1MB of chromosome 3 from maize between refgen version 1 and 2. Version 1 has gene models and non-CDS sequences masked (purple). Note the sets of genes that have been reoriented in version 2. These show up where regions of sequence similarity (pink blocks) are drawn below the dashed line in both panels. Results can be regenerated at http://genomevolution.org/r/4du]] | |||
Revision as of 16:16, 3 May 2010
