Tutorial for High School Students: Difference between revisions
Jump to navigation
Jump to search
mNo edit summary |
mNo edit summary |
||
| Line 27: | Line 27: | ||
| [[Computationally Comparing Different Genomes]] | | [[Computationally Comparing Different Genomes]] | ||
| Learn how to have computers compare DNA from different organisms<br> | | Learn how to have computers compare DNA from different organisms<br> | ||
| FastaView, [http://www.youtube.com/watch?v=qdkgrtXySlI&feature=player_embedded CoGeBlast], [http://www.youtube.com/watch?v=0FE_ylQqBJc&feature=player_embedded GEvo] | | [[FastaView|FastaView]], [http://www.youtube.com/watch?v=qdkgrtXySlI&feature=player_embedded CoGeBlast], [http://www.youtube.com/watch?v=0FE_ylQqBJc&feature=player_embedded GEvo] | ||
|- | |- | ||
| 4 | | 4 | ||
Revision as of 22:00, 21 June 2010
Overview
This tutorial is intended as a walkthrough for high school students to help them navigate and fully utilize the CoGe program while learning about comparative genomics.
Lessons
Basics
| # | Name | Description | New Program Used |
|---|---|---|---|
| 1 | Required Background Information | Explains the basic genetic concepts and vocabulary required to use CoGe | None |
| 2 | Visually Comparing Genomes | Learn how to generate a pictorial representation of genomes | OrganismView & GenomeView |
| 3 | Computationally Comparing Different Genomes | Learn how to have computers compare DNA from different organisms |
FastaView, CoGeBlast, GEvo |
| 4 | Synteny: Getting the Big Picture |
Learn about a great way of comparing two complete genomes (syntenic dot plots) |
SynMap |
Advanced
| # | Name | Description |
|---|---|---|
| 1 | Identifying Transposons | Learn how to identify transposon which have never been discovered before |
| 2 | ||
| 3 |